Locus 1763

Sequence ID 2R_DroMel_CAF1
Location 6,599,511 – 6,599,602
Length 91
Max. P 0.759765
window2936

overview

Window 6

Location 6,599,511 – 6,599,602
Length 91
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 88.09
Mean single sequence MFE -24.29
Consensus MFE -19.64
Energy contribution -19.64
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.81
SVM decision value 0.50
SVM RNA-class probability 0.759765
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6599511 91 + 20766785
GUGUGUGCAGUG-----UAUGGAGUGUGGCAAUGCAUAACGCAUUAACAAACGGCUUUCAGCUGCAUAUUGGCUUUUGUGAUUAACGCUCACACAU
(((((((.((((-----(....((((((..(((((.....)))))......((((.....)))))))))).((....)).....)))))))))))) ( -25.60)
>DroSec_CAF1 152000 82 + 1
GUGUGU--------------GGAGUGUGGCAAUGCAUAACGCAUUAACAAACGGCUUUCAGCUGCAUAUUGGCUUUUGUGAUUAACGCUCACACAU
((((((--------------(.((((((..(((((.....)))))..)...((((.....))))((((........))))....)))))))))))) ( -24.10)
>DroSim_CAF1 138798 82 + 1
GUGUGU--------------GGAGUGUGGCAAUGCAUAACGCAUUAACAAACGGCUUUCAGCUGCAUAUUGGCUUUUGUGAUUAACGCUCACACAU
((((((--------------(.((((((..(((((.....)))))..)...((((.....))))((((........))))....)))))))))))) ( -24.10)
>DroEre_CAF1 151215 96 + 1
GUGUGUGGAAUGUGGAGUGUGGAGUGUGGCAAUGCAUAACGCAUUAACAAACGGCUUUCAGCUGCAUAUUGGCUUUUGUGAUUAACGCUCACACAU
((((((((((((((.(((..(((((.((..(((((.....)))))..))....)))))..))).)))))).......(((.....))))))))))) ( -28.00)
>DroYak_CAF1 158448 78 + 1
------------------AGAGAGUGUGGCAAUGCAUAACGCAUUAACAAACGGCUUUCAGCUGCAUAUUGGCUUUUGUGAUUAACGCUCACACAU
------------------.....((((((((((((.....))))).(((((.((((..............))))))))).......)).))))).. ( -19.64)
>consensus
GUGUGU______________GGAGUGUGGCAAUGCAUAACGCAUUAACAAACGGCUUUCAGCUGCAUAUUGGCUUUUGUGAUUAACGCUCACACAU
.......................((((((((((((.....))))).(((((.((((..............))))))))).......)).))))).. (-19.64 = -19.64 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:35 2006