Locus 1762

Sequence ID 2R_DroMel_CAF1
Location 6,599,011 – 6,599,108
Length 97
Max. P 0.522523
window2935

overview

Window 5

Location 6,599,011 – 6,599,108
Length 97
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 78.58
Mean single sequence MFE -29.12
Consensus MFE -14.22
Energy contribution -14.91
Covariance contribution 0.70
Combinations/Pair 1.18
Mean z-score -1.97
Structure conservation index 0.49
SVM decision value -0.02
SVM RNA-class probability 0.522523
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6599011 97 - 20766785
AUGUCCC------AGCUCUGUGUUGCAUCAUCGGACUGCAGCGGGGCAUGCAACAAUUGAGGCUAUGCAAGCUCA-----AC-----AAAAAAUCCUGUUUUUGUUAGCCUUC
(((((((------.((...))((((((((....)).))))))))))))).........(((((((.(((((...(-----((-----(........)))))))))))))))). ( -28.70)
>DroSec_CAF1 151505 97 - 1
AUGUCCC------AGCUCGGUGUUGCAUCAUCGAACUGCAGCGGGGCAUGCAACAAUUGAGGCUAUGCAAGCUCA-----AC-----AAAAAAUCCUGUUAUUGUUAGCCUUC
(((((((------.(((((((.(((......))))))).)))))))))).........(((((((.((((....(-----((-----(........)))).))))))))))). ( -29.40)
>DroSim_CAF1 138298 97 - 1
AUGUCCC------AGCUCGGUGUUGCAUCAUCGAACUGCAGCGGGGCAUGCAACAAUUGAGGCUAUGCAAGCUCA-----AC-----AAAAAAUCCUGUUUUUGUUAGCCUUC
(((((((------.(((((((.(((......))))))).)))))))))).........(((((((.(((((...(-----((-----(........)))))))))))))))). ( -29.40)
>DroEre_CAF1 150687 98 - 1
AUGUGCC------UGCCUGGCGUUGCAUCAUCGAACUGCAGCGG-ACAUGCAACAAUUGCGGCCGUGCAACAUCA-----AUGGAAAAAACAUUCCUGUUUUUGUUAGCC---
....(((------.....)))((((((.........))))))((-...((((.....)))).))..((((((..(-----((((((......)))).)))..)))).)).--- ( -24.50)
>DroYak_CAF1 157937 112 - 1
AACUCCCGCUCGCAGCUUGGUGUUGCAUCAUCGAACUGCAGCGG-GCAUGCAACAAUUGAGGCUGUGCAACCUCAAAAAAAUCAAAAAAAAAAUCCUGUUUUUGUUAGCCUUC
....((((((.((((.((((((......)))))).)))))))))-)...(((((..((((((........))))))............((((((...))))))))).)).... ( -32.50)
>DroAna_CAF1 164949 86 - 1
AUGGGCC------GGCCUGUUGUUGCGUCAUCG---UGCAACGG-ACAUGCAACAAUUGUGCCUAUGAAG-C---------A-----AAAAAAUCCUGUUUUUGCUAGCCU--
..((((.------((((.((((((((((..(((---.....)))-..)))))))))).).))).....((-(---------(-----((((.......)))))))).))))-- ( -30.20)
>consensus
AUGUCCC______AGCUCGGUGUUGCAUCAUCGAACUGCAGCGG_GCAUGCAACAAUUGAGGCUAUGCAAGCUCA_____AC_____AAAAAAUCCUGUUUUUGUUAGCCUUC
....................((((((((..(((........)))...))))))))...(((((((.((((...............................))))))))))). (-14.22 = -14.91 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:34 2006