Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,433,905 – 1,434,025 |
Length | 120 |
Max. P | 0.695679 |
Location | 1,433,905 – 1,434,025 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.97 |
Mean single sequence MFE | -42.28 |
Consensus MFE | -28.80 |
Energy contribution | -30.43 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.20 |
Mean z-score | -1.83 |
Structure conservation index | 0.68 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695679 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1433905 120 - 20766785 UGUGGAGCCGGCGAUGGUGAGCCAAGGUGCAAUUGCUGCUGCAGUUGUGACAGCGAAGGAAGCGGCGUCUUUUUCAGAGGCUUAUGUUGCACUGGUGGUGGAGUUAGUAAAGUAGACACA .(((..((((....))))..((((.((((((((.((((((.(..((((....))))..).))))))(((((.....)))))....))))))))..)))).................))). ( -39.60) >DroSec_CAF1 51090 120 - 1 UGUGGAGCUGACGAUGCUGAGCCAAGGUUCAAUUGCUGCUGCAGUUGCGACAGCGAAGGAAGCGGAGUCUUUUUCAGAGGCUUAUGUUGCACUGGUGGUGGAGUCAGUAAAUUAGACACA .(((..((((((.....(((((....)))))....(..(..((((.((((((((.......)).(((((((.....))))))).))))))))).)..)..).))))))........))). ( -40.20) >DroEre_CAF1 50472 117 - 1 UGUGGAGCUGGCGAUGGUG---CGAGCUGCAGUUGCUGCUGCAGCUGCGCCAGCGAAGACAGCGGAGUUUUUUUCAGAGGCUUAUGCUGCACUGGUGGCUGGAGGAGUAAAGUGGACACA .(((..((((.((.(((((---(.(((((((((....))))))))))))))).))....)))).....(((((((((..(((..((...))..)))..))))))))).........))). ( -48.40) >DroYak_CAF1 55505 120 - 1 UGUGGAGCUGGUGAUGGUGAGCCAAGGUGCAAUUGCUGCUGCAACUGCGCCAGCGAAGGCAGCGGAGACUUUUUUAGAGGCUUAUGCUGCACUGGGGGUUGAGGUAGUAAAGUAGACACA .(((...(((.(....(((((((..((((((.((((....)))).)))))).((....))...(....).........)))))))(((((.((........)))))))..).))).))). ( -40.90) >consensus UGUGGAGCUGGCGAUGGUGAGCCAAGGUGCAAUUGCUGCUGCAGCUGCGACAGCGAAGGAAGCGGAGUCUUUUUCAGAGGCUUAUGCUGCACUGGUGGUGGAGGUAGUAAAGUAGACACA .(((..((((((..(((....)))....((((((((....))))))))))))))..(((((((((((((((.....))))))).)))))).)).......................))). (-28.80 = -30.43 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:16 2006