| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,597,112 – 6,597,203 |
| Length | 91 |
| Max. P | 0.942913 |
| Location | 6,597,112 – 6,597,203 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 95.42 |
| Mean single sequence MFE | -18.10 |
| Consensus MFE | -16.40 |
| Energy contribution | -16.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.942913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6597112 91 - 20766785 CGUCGUUUUUUUAUAGUCCUUUGCUGGUUCUUUUUUGUACAUUUUCUUUUUAGCCAGCAUGUUUCGAAAUUCAAUUUUCGUCAAGUUGGCA ....((........((.((......))..)).......))............((((((.((...(((((......))))).)).)))))). ( -17.36) >DroSec_CAF1 149640 91 - 1 CGUCGUUUUUUUAUAGUCCUUUGCUGGUUCGUUUUUGUACAUUUUCUUUUUAGCCAGCAUGUUUCGAAAUUCAAUUUUCGUCAAGUUGGCA ....((...........((......))...........))............((((((.((...(((((......))))).)).)))))). ( -17.25) >DroSim_CAF1 136430 91 - 1 CGUCGUUUUUUUAUAGUCCUUUGCUGGUUUGUUUUUGUACAUUUUCUUUUUAGCCAGCAUGUUUCGAAAUUCAAUUUUCGUCAAGUUGGCA ....((......((((.((......)).))))......))............((((((.((...(((((......))))).)).)))))). ( -19.10) >DroYak_CAF1 155987 88 - 1 CGUC--GUUUUUAUAGUCCUUUGGUGGUUCUUUUU-CUACAUUUUCUUUUUAGCCAGCAUGUUUCGAAAUUCAAUUUUCGUCAAGUUGGCA ....--.................((((........-))))............((((((.((...(((((......))))).)).)))))). ( -18.70) >consensus CGUCGUUUUUUUAUAGUCCUUUGCUGGUUCGUUUUUGUACAUUUUCUUUUUAGCCAGCAUGUUUCGAAAUUCAAUUUUCGUCAAGUUGGCA .................((......)).........................((((((.((...(((((......))))).)).)))))). (-16.40 = -16.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:28 2006