Locus 1757

Sequence ID 2R_DroMel_CAF1
Location 6,594,800 – 6,594,912
Length 112
Max. P 0.971027
window2927

overview

Window 7

Location 6,594,800 – 6,594,912
Length 112
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 72.44
Mean single sequence MFE -25.90
Consensus MFE -15.80
Energy contribution -17.04
Covariance contribution 1.24
Combinations/Pair 1.06
Mean z-score -1.98
Structure conservation index 0.61
SVM decision value 1.67
SVM RNA-class probability 0.971027
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6594800 112 - 20766785
GCCGCGAGUACGGCACUUAAACGGACUCGCUCGGCUCCUGCAAUUCUUUGCAGCUUCC----CGGGGCUUUUCCUACCAACAUACCAACAUACCAACAUACAACCCUCCACCACCC
(((((((((.((.........)).))))))((((...((((((....))))))....)----))))))................................................ ( -27.30)
>DroSec_CAF1 147410 103 - 1
GCCGCGAGUACGCCACUUAAACGGACUCGCUCGGCUCCUGCAAUUCUUUGCAGCUUCC----CGGGGCUUUUUCUAGCAACAUACCA--------CUCUGCAACCCACC-CUACUC
(((((((((.((.........)).))))))((((...((((((....))))))....)----))))))........(((........--------...)))........-...... ( -27.30)
>DroSim_CAF1 134173 103 - 1
GCCGCGAGUACGCCACUUAAACGGACUCGCUCGGCUCCUGCAAUUCUUUGCAGCUUCC----CGGGGCUUUUCCUAGCAACAUACCA--------CUCUGCAACCCACC-CUACUC
(((((((((.((.........)).))))))((((...((((((....))))))....)----))))))........(((........--------...)))........-...... ( -27.30)
>DroEre_CAF1 146753 92 - 1
GCCGCGAGUACGCCACUUAAACGGACUCGCUCAGCUCGCGCAAUUCUUUGCAGCUUCC----CGGCGCUUUUCCGACC--------A--------CCCACCAAC----CACCACCC
(((((((((.((.........)).))))))..((((...((((....))))))))...----.)))............--------.--------.........----........ ( -21.50)
>DroAna_CAF1 160663 99 - 1
GCCGUGAGUGCGCCACUUAAACGGACUCGCU-----UCUGCCUUCCUUACCAGCUUUCGAUUCAGGUCUUUCCCAGGCUUCCUGGCU--------CCCUGG---CUUCC-UGGCUC
(((((((((.((.........)).)))))).-----......................((.(((((......(((((...)))))..--------.)))))---..)).-.))).. ( -26.10)
>consensus
GCCGCGAGUACGCCACUUAAACGGACUCGCUCGGCUCCUGCAAUUCUUUGCAGCUUCC____CGGGGCUUUUCCUAGCAACAUACCA________CCCUGCAACCCACC_CCACUC
(((((((((.((.........)).)))))).......((((((....))))))............)))................................................ (-15.80 = -17.04 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:27 2006