Locus 1755

Sequence ID 2R_DroMel_CAF1
Location 6,588,520 – 6,588,625
Length 105
Max. P 0.617404
window2925

overview

Window 5

Location 6,588,520 – 6,588,625
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 81.54
Mean single sequence MFE -38.96
Consensus MFE -29.65
Energy contribution -31.62
Covariance contribution 1.97
Combinations/Pair 1.23
Mean z-score -1.56
Structure conservation index 0.76
SVM decision value 0.17
SVM RNA-class probability 0.617404
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6588520 105 - 20766785
UCCUGCAGCAUGCAACAUACAGCGUGCAGCAUGCAGCAUCCAGCAUGGAGCAUGCAGAGUGCAGUGUGUCGUGUGUGUGGGUUGCCCUUUUCUGUGGCGGCCUCU
....(((.(((((.((((((.(((..(.((((((....(((.....))))))))).)..))).)))))).))))))))(((((((((......).)))))))).. ( -41.70)
>DroSec_CAF1 141139 91 - 1
UCCUGUAGCAUGCAACAUACAGCGU-------GCAGCAU-------GCAGCAUGCAGAGUGCAGUGUGUCGUGUGUGUGGGUUGCCCUUUUCUGUGGCGACCUCU
.......((((((.((((((.((((-------(...)))-------)).((((.....)))).)))))).))))))..(((((((((......).)))))))).. ( -35.20)
>DroSim_CAF1 127449 98 - 1
UCCUGUAGCAUGCAACAUACAGCGUGCAGCGUGCAGCAU-------GCAGCAUGCAGAGUGCAGUGUGUCGUGUGUGUGGGUUGCCCUUUUCUGUGGCGGCCUCU
.......((((((.((((((.((((((........))))-------)).((((.....)))).)))))).))))))..(((((((((......).)))))))).. ( -39.70)
>DroEre_CAF1 140724 91 - 1
UUCUGCAACGUGCAACAUGCAACAUGCAGCAUGCAG--------------AGUGCAGUGUGCCGUGCGCCGUGUGUGUGGGUUGCCCUUUUCUGUGGCGGCCUCU
..(((((...(((.....)))...)))))((((((.--------------.(((((........)))))..)))))).(((((((((......).)))))))).. ( -33.40)
>DroYak_CAF1 147281 105 - 1
UCCUGCAACGUGCAACAUGCAACAUGCAGCAUGCGGCAGGCAGCAGGCAGCCGGCAGAGUGCAGUGUGCCGUGUGUGUGGGUUGCCCUUUUCUGUGGCGGCCUCU
.(((((..(((((..((((...))))..)))))..)))))...((.(((..(((((.(......).)))))..))).))((((((((......).)))))))... ( -44.80)
>consensus
UCCUGCAGCAUGCAACAUACAGCGUGCAGCAUGCAGCAU_______GCAGCAUGCAGAGUGCAGUGUGUCGUGUGUGUGGGUUGCCCUUUUCUGUGGCGGCCUCU
.......(((..(.((((((.(((..(.((((((.((.........)).)))))).)..))).)))))).)..)))..(((((((((......).)))))))).. (-29.65 = -31.62 +   1.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:25 2006