| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,586,692 – 6,586,789 |
| Length | 97 |
| Max. P | 0.528273 |
| Location | 6,586,692 – 6,586,789 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 85.95 |
| Mean single sequence MFE | -30.67 |
| Consensus MFE | -22.83 |
| Energy contribution | -22.56 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6586692 97 - 20766785 -----------AAGCCAAGGAGACG-GCGUCAAAUCGAUUUGCGAAACAACAAAACAUGGCGCGAUAAGCGCGGCAAUGAGACAAGA-ACGUAACUCGAUGAUGAUGCCA -----------.......(....)(-((((((.(((((.(((((.............((.((((.....)))).))...........-.))))).)))))..))))))). ( -32.01) >DroPse_CAF1 138405 103 - 1 -AGCUCCAGC-CAGUCAAGGGGCCG-GCGUCAAAUCGAUUUGCGCUACAACAAAACACGGCGCGAUAAGCGCGGCAAUGAGACAGGA-ACGUAACUUGAU---GAUGCCA -.(((((...-.......))))).(-((((((..((((.(((((.............(.((((.....)))).).............-.))))).)))))---)))))). ( -31.83) >DroEre_CAF1 138995 97 - 1 -----------GAGCCAAGGAGACG-GCGUCAAAUCGAUUUGCGAAACAACAAAACAUGGCGCGAUAAGCGCGGCAAUGAGACAGGA-ACGUAACUUGAUGAUGAUGCCA -----------.......(....)(-((((((.(((((.(((((.............((.((((.....)))).))...........-.))))).)))))..))))))). ( -29.91) >DroYak_CAF1 145259 97 - 1 -----------GAGCCAAGGAGACG-GCGUCAAAUCGAUUUGCGAAACAACAAAACAUGGCGCGAUAAGCGCGGCAAUGAGACAAGA-ACGUAACUUGAUGAUGAUGCCA -----------.......(....)(-((((((.(((((.(((((.............((.((((.....)))).))...........-.))))).)))))..))))))). ( -29.91) >DroAna_CAF1 141671 100 - 1 G----AUUGG-GAGCCAAGGAGACG-GCGUCAAAUCGAUUUGCGCAACAACAAAACACGGUGCGAUAAGCGCGGCAAUGAGACAAGA-ACGUAACUUGAU---GAUGCCG .----.((((-...))))(....)(-((((((..((((.(((((.............(.((((.....)))).).............-.))))).)))))---)))))). ( -26.53) >DroPer_CAF1 135811 107 - 1 GAGCUCCAGCCCAGUCAAGGGGCCGGGCGUCAAAUCGAUUUGCGCUACAACAAAACACGGCGCGAUAAGCGCGGCAAUGAGACAGGAAACGUAACUUGAU---GAUGCCA ......(.((((.......)))).)(((((((..((((.(((((((....(.......)((((.....))))))).........(....))))).)))))---)))))). ( -33.80) >consensus ___________GAGCCAAGGAGACG_GCGUCAAAUCGAUUUGCGAAACAACAAAACACGGCGCGAUAAGCGCGGCAAUGAGACAAGA_ACGUAACUUGAU___GAUGCCA ..................(....)(.(((((..(((((.(((((..............(.((((.....)))).)..............))))).)))))...)))))). (-22.83 = -22.56 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:24 2006