Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,585,450 – 6,585,540 |
Length | 90 |
Max. P | 0.736844 |
Location | 6,585,450 – 6,585,540 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 71.08 |
Mean single sequence MFE | -28.66 |
Consensus MFE | -6.66 |
Energy contribution | -7.74 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.80 |
Structure conservation index | 0.23 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736844 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6585450 90 + 20766785 CCGCCCCGCAGCAGAUGACUGUAUAU---CUAUAGUC--U--AUGGACCCAUGGACCUUAUCGAUAGGACCC-AUU-GCGCUUGGUG----GGCUAAAAAAAG (((((.((((((((....)))).(((---(.((((((--(--(((....)))))))..))).))))......-..)-)))...))))----)........... ( -27.20) >DroSec_CAF1 138113 87 + 1 CCGCCCCGCAGCAGAUGACUGUAUAU---CUAUAGUC--U--AUGGACCCAUGGACCUUAUCGAUAGGACCC-ACU-G--CUCGGUG----GGCUAAA-AAAG ..((((((.(((((.((...((.(((---(.((((((--(--(((....)))))))..))).))))..)).)-)))-)--))))..)----)))....-.... ( -28.50) >DroSim_CAF1 124420 87 + 1 CCGCCCCGCAGCAGAUGACUGUAUAU---CUAUAGUC--U--AUGGACCCAUGGACCUUAUCGAUAGGACCC-ACU-G--CUCGGUG----GGCUAAA-AAAG ..((((((.(((((.((...((.(((---(.((((((--(--(((....)))))))..))).))))..)).)-)))-)--))))..)----)))....-.... ( -28.50) >DroEre_CAF1 137773 82 + 1 CCGCCCCGCAGCAGAUGACUGUAG-U---CCGU---------ACUAGUCCAUGGACCCUAUCGAUAGGACCC-ACUUG--GGUGGUG----GGCGGCA-ACAG ((((((.((.((((....)))).(-(---((((---------........))))))((((....))))((((-....)--))).)))----)))))..-.... ( -30.00) >DroAna_CAF1 139996 92 + 1 CAGCCCGACAGCAGAUGAGUGUGUAUGGCCAGUAGUGGCUGAGUAGACUCAUAGUCCU--------GGCCUCAACU-G-GCCUGGAAAAAAAACGUAA-AAAG ..((......))..((((((.((..((((((....))))))..)).))))))..(((.--------((((......-)-))).)))............-.... ( -29.10) >consensus CCGCCCCGCAGCAGAUGACUGUAUAU___CUAUAGUC__U__AUGGACCCAUGGACCUUAUCGAUAGGACCC_ACU_G__CUUGGUG____GGCUAAA_AAAG ..(((.(((.((((....))))..............................((.(((.......))).)).............)))....)))......... ( -6.66 = -7.74 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:21 2006