Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,585,110 – 6,585,209 |
Length | 99 |
Max. P | 0.610099 |
Location | 6,585,110 – 6,585,209 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 88.93 |
Mean single sequence MFE | -18.81 |
Consensus MFE | -17.61 |
Energy contribution | -17.50 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.10 |
Mean z-score | -1.33 |
Structure conservation index | 0.94 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6585110 99 + 20766785 AUAAA-AUUAAUUUAACUUGGAAAACUAAAAUCCAUUGAUUACUGCCUCUGAUUUCUUACAGUGCAUCAAGCUCGAACAGAGCAAACAUCAGGCUCUUAG .....-..........(((((..............((((((((((..............))))).)))))((((.....)))).....)))))....... ( -15.84) >DroSec_CAF1 137781 98 + 1 AUCAAAAUGAA--UAGUUUGGAAACCUAAAACCCUUUGAUUUCUGCCUCUGAUUUCUUGCAGUGCAUCAAGCUCUAACAGAGCAAACACCAGGCUCUUAG ...........--.(((((((..............(((((..((((....(....)..))))...)))))((((.....)))).....)))))))..... ( -20.30) >DroSim_CAF1 124081 98 + 1 AUCAAAAUCAA--UAGUUUGGAAACCUGAAACCUUUUGAUUUCUGCCUCUGAUUUCUUGCAGUGCAUCAAGCUCUAACAGAGCAAACACCAGGCUCUUAG ...........--.(((((((..............(((((..((((....(....)..))))...)))))((((.....)))).....)))))))..... ( -20.30) >consensus AUCAAAAUCAA__UAGUUUGGAAACCUAAAACCCUUUGAUUUCUGCCUCUGAUUUCUUGCAGUGCAUCAAGCUCUAACAGAGCAAACACCAGGCUCUUAG ..............(((((((..............((((....(((..(((........))).)))))))((((.....)))).....)))))))..... (-17.61 = -17.50 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:20 2006