Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,580,228 – 6,580,328 |
Length | 100 |
Max. P | 0.519921 |
Location | 6,580,228 – 6,580,328 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 90.12 |
Mean single sequence MFE | -31.61 |
Consensus MFE | -21.40 |
Energy contribution | -22.00 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.28 |
Structure conservation index | 0.68 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519921 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6580228 100 - 20766785 GCAUCGGACCAUUGAGUCAUCAGCUGGGUGAAUCCGAAAACGGGAAUAAAAGCCACAUGGCCACAUGGGCACAUGGGCACAUUGCGGCACAAGACCCGUA ...(((((.((((.(((.....))).))))..)))))..(((((.......(((.(((((((.((((....))))))).)).)).)))......))))). ( -36.42) >DroSec_CAF1 132896 97 - 1 GCAACGGACCAUUGAGUCAUCAGCUGGGUGAAUCCGAAAACGGGAAUAAAAGCCACAUGGCCACAUGAGCACAUGGGCACAUUGCGG---AAGACCCGUA ....((((.((((.(((.....))).))))..))))...(((((.......(((.(((((((....).)).)))))))......(..---..).))))). ( -31.80) >DroSim_CAF1 119177 97 - 1 GCAACGGACCAUUGAGUCAUCAGCUGGGUGAAUCCGAAAACGGGAAUAAAAGCCACAUGGCCACAUGGGCACAUGGGCACAUUGCGG---AAGACCCGUA ....((((.((((.(((.....))).))))..))))...(((((.......(((.(((((((.....))).)))))))......(..---..).))))). ( -35.20) >DroEre_CAF1 132686 89 - 1 GCAACGGACCAUUGAGUCAUCAGAUGGGUGAAUCCGAAAGCGGGAAUAAAAGCCACAUGGCCACAUGG--------CCACAUUGCGG---AAUACCCGGC ((..(((((((((((....))).)))).....))))....((((.......((....(((((....))--------)))....))..---....)))))) ( -26.32) >DroYak_CAF1 139243 97 - 1 GCAUCGGACCAUUGAGUCAUCAGAUGGGUGAAUCCGAAAACGGGAAUAAAAGCCACAUGACCACAUGGGCACUAUGCCACAUUGCGG---AAGACCCGGA ...((((((((((((....))).)))).....)))))...((((.......(((.((((....))))))).((.(((......))).---.)).)))).. ( -28.30) >consensus GCAACGGACCAUUGAGUCAUCAGCUGGGUGAAUCCGAAAACGGGAAUAAAAGCCACAUGGCCACAUGGGCACAUGGGCACAUUGCGG___AAGACCCGUA ....(((.(((((((....)))).)))(((..((((....)))).......(((.((((....))))))).......)))...............))).. (-21.40 = -22.00 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:19 2006