Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,432,924 – 1,433,044 |
Length | 120 |
Max. P | 0.609002 |
Location | 1,432,924 – 1,433,044 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -38.17 |
Consensus MFE | -29.43 |
Energy contribution | -29.43 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.13 |
Mean z-score | -2.06 |
Structure conservation index | 0.77 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609002 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1432924 120 + 20766785 CACAGAAGUUGUGCUCACCCACCAGCUGGCCAAGAAGCCGGCUAGUGUGCAGCGCAAGCCGAACCAGCCACAUCGAGUGAAAAAGCCUAACGGUAAUGGUACAACUCAAACUACAUCUCA ....((.(((((((((((.(((.(((((((......))))))).)))....((....)).................))))....(((....)))....)))))))))............. ( -37.10) >DroEre_CAF1 49473 120 + 1 CACCGAAGUUGUGCUUACCAACCAGCUAGCCAAGAAGCCGGCCAGUGUGCAGCGCAAGCCGAUCCUGCCACACCGGGUGAAAAAGCCUAACGGUGAUGGUACAGCGGAAACUACAUCCCA ....(.((((((((((((..((..((..((......))..))..))))).)))))...(((....(((((((((((((......)))...))))).)))))...))).)))).)...... ( -35.50) >DroYak_CAF1 54530 120 + 1 CGCCGAGGUUGUGCUUACACACCAGCUAGCCAAAAAGCCGGCUAGUGUGGAGCGCAAGCCAAACCAGCCACAUCGAGUAAAAAAGCCUAACGGUGAUGGUACAGCGGGAACUACAUCUCA .((.(.((((((((((.(((((.(((..((......))..))).))))))))))).))))......(((((((((.((......))....))))).)))).).))((((......)))). ( -41.90) >consensus CACCGAAGUUGUGCUUACCCACCAGCUAGCCAAGAAGCCGGCUAGUGUGCAGCGCAAGCCGAACCAGCCACAUCGAGUGAAAAAGCCUAACGGUGAUGGUACAGCGGAAACUACAUCUCA ..(((...((((((((((......(((((((........)))))))))).))))))).........(((((((((.((......))....))))).))))....)))............. (-29.43 = -29.43 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:14 2006