Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,577,767 – 6,577,857 |
Length | 90 |
Max. P | 0.711570 |
Location | 6,577,767 – 6,577,857 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 87.92 |
Mean single sequence MFE | -11.80 |
Consensus MFE | -11.03 |
Energy contribution | -11.03 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.39 |
Structure conservation index | 0.94 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6577767 90 + 20766785 ACACUGCAAUGGAUCAACUCAAGUGAUUUUGUGUUGUACUAUAUGC-CUCCCUUCAAUUACAAAAAAAAAAAAAACGAAAAAGCAAAAAAU .....(((((((..((((.((((....)))).))))..)))).)))-............................................ ( -10.70) >DroSec_CAF1 130467 83 + 1 ACACUGCAAUGGAUCAACUCAAGUGCUUUUGUGUUGUACUAUAUGCACACCCUUCAAUCACAAAAAC--GAAAAUCGAAA------AAACU ....((((((((..((((.((((....)))).))))..)))).))))...................(--(.....))...------..... ( -12.60) >DroSim_CAF1 116762 83 + 1 ACACUGCAAUGGAUCAACUCAAGUGCUUUUGUGUUGUACUAUAUGCACACCCUUCAAUCACAAAAAC--GAAAAACGAAA------AAACU ....((((((((..((((.((((....)))).))))..)))).))))....................--...........------..... ( -12.10) >consensus ACACUGCAAUGGAUCAACUCAAGUGCUUUUGUGUUGUACUAUAUGCACACCCUUCAAUCACAAAAAC__GAAAAACGAAA______AAACU .....(((((((..((((.((((....)))).))))..)))).)))............................................. (-11.03 = -11.03 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:18 2006