Locus 1747

Sequence ID 2R_DroMel_CAF1
Location 6,570,647 – 6,570,739
Length 92
Max. P 0.999716
window2915

overview

Window 5

Location 6,570,647 – 6,570,739
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 90.90
Mean single sequence MFE -33.39
Consensus MFE -29.98
Energy contribution -30.01
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -4.34
Structure conservation index 0.90
SVM decision value 3.94
SVM RNA-class probability 0.999716
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6570647 92 + 20766785
ACUCGAGUGUUUGCAGCUGAAGAAAAGCAUUUGAUGUUUUUAAUUGAGUGCUUUUCGCAGCACUUGAGGGCGACACUUGCCCACACACCCAC
..(((((((((.((.......((((((((((..((.......))..)))))))))))))))))))))((((((...)))))).......... ( -34.71)
>DroSec_CAF1 123378 84 + 1
ACUCGAGUGUUUGCAGCUGAAGAAAAGCAUUUGAUGUUUUUAAUUGAGUGCUUUUCGCAGCACUUGAGGGCGACACUUGCCCAA--------
..(((((((((.((.......((((((((((..((.......))..)))))))))))))))))))))((((((...))))))..-------- ( -34.71)
>DroSim_CAF1 109809 83 + 1
ACUCGAGUGUUUGCAGCUGAAGAAAAGCAUUUGAUGUUUUUAAUUGAGUGCUUUUCGCAGCACUUGAGGGCGACACUUGCCCA---------
..(((((((((.((.......((((((((((..((.......))..)))))))))))))))))))))((((((...)))))).--------- ( -34.71)
>DroEre_CAF1 123528 92 + 1
ACUCGAGUGUUUGCAGCUGAAGAAAAGCAUUUGAUGUUUUUAAUUGAGUGCUUUUCGCAGCACUUGAGAGCGACACUUGCCCACACACACAC
...((((((((.((.((((..((((((((((..((.......))..)))))))))).)))).(....).))))))))))............. ( -31.10)
>DroYak_CAF1 129255 92 + 1
ACUCGAGUGUUUGCAGCUGAAGAAAAGCAUUUGAUGUUUUUAAUUGAGUGCUUUUCGCAGCACUUGAGAGCGACACUUGCCCACACACACAC
...((((((((.((.((((..((((((((((..((.......))..)))))))))).)))).(....).))))))))))............. ( -31.10)
>DroAna_CAF1 123380 87 + 1
GCCCGAGUGUUUGCAGCUAAAGAAAAGCAUUUGAUGUUUUUAAUUGAGUGCUUUUCGCAGCACUCGAGUGCGACACUUGCUCGUACA-----
...((((((((.((.......((((((((((..((.......))..)))))))))))))))))))).(((((((....).)))))).----- ( -34.01)
>consensus
ACUCGAGUGUUUGCAGCUGAAGAAAAGCAUUUGAUGUUUUUAAUUGAGUGCUUUUCGCAGCACUUGAGGGCGACACUUGCCCACACA_____
.((((((((((.((.......((((((((((..((.......))..)))))))))))))))))))))).((((...))))............ (-29.98 = -30.01 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:16 2006