Locus 1746

Sequence ID 2R_DroMel_CAF1
Location 6,568,003 – 6,568,094
Length 91
Max. P 0.960034
window2914

overview

Window 4

Location 6,568,003 – 6,568,094
Length 91
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 77.59
Mean single sequence MFE -25.09
Consensus MFE -20.66
Energy contribution -20.48
Covariance contribution -0.19
Combinations/Pair 1.08
Mean z-score -1.89
Structure conservation index 0.82
SVM decision value 1.51
SVM RNA-class probability 0.960034
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6568003 91 - 20766785
UGUCAGCCCGGCCGGGAACCCUUUCAUGGGCACAAAAACCAGCCAAAGGGGUGUGACCCAGACCCACAUCU-----CCCACACCCAUA-----CCCCAUAC-----------
.....(((((...((....)).....)))))................((((((((................-----........))))-----))))....----------- ( -23.56)
>DroSec_CAF1 120568 104 - 1
UGUCAGCCCGGCCGGGAACCCUUUAACGGGCACAAAAACCAGCCAAAGGGGUGUGACCCAGACCCACACCC--------GCACCCACACCAUUCCCCAACCCCCCUCCACCA
.....(((((...((....)).....))))).................(((((((.........)))))))--------................................. ( -24.70)
>DroEre_CAF1 121096 101 - 1
UGUCAGCCCGGCCGGGAACCCUUUCACGGGCACAAAAACCACCCAAAGGGGUGUGACCCAGACCCAUACCCCCUAUCCCCUACCCACACCCAUGGCCACAC-----------
.........(((((((..(((......))).................((((((((.........))))))))................)))..))))....----------- ( -29.00)
>DroYak_CAF1 126563 103 - 1
UGUCAGCCCGGCCGGGAACCCUUUCACGGGCACAAAAACCAGCCAAAGGGGUGUGACCCAGACCCAGACUCA--UUCCCAUACCAACACCAUUCCCCAGAACU-------GA
.(((.(((((...((....)).....))))).................((((.((...)).)))).)))...--.............................-------.. ( -23.10)
>consensus
UGUCAGCCCGGCCGGGAACCCUUUCACGGGCACAAAAACCAGCCAAAGGGGUGUGACCCAGACCCACACCC_____CCCACACCCACACCAUUCCCCAAAC___________
.(((.(((((...((....)).....)))))................(((......))).)))................................................. (-20.66 = -20.48 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:15 2006