Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,560,617 – 6,560,711 |
Length | 94 |
Max. P | 0.999715 |
Location | 6,560,617 – 6,560,711 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 93.92 |
Mean single sequence MFE | -24.58 |
Consensus MFE | -23.44 |
Energy contribution | -23.55 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.35 |
Structure conservation index | 0.95 |
SVM decision value | 3.94 |
SVM RNA-class probability | 0.999715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6560617 94 + 20766785 AUGACCAUCUAUUAGCACGCCUCAAGGUUGGCAAACAGCCGAAGAAAAUAAGAAAACUCUUCAUUGUUUUCG-UUUCUGUUUGCUUUAGUGUUUG .............((((((((....))).(((((((((.....(((((((((((.....))).)))))))).-...)))))))))...))))).. ( -25.00) >DroSec_CAF1 113280 94 + 1 AUGACCAUCUAUUAGCACGCCUCAAGGUUGGCAAACAGCCGAAGAAAAUAAGAAAACUCUUCAUUGUUUUCG-UUUUUGUUUGCUUUAGUGUUUG .............((((((((....))).(((((((((.....(((((((((((.....))).)))))))).-...)))))))))...))))).. ( -22.80) >DroSim_CAF1 99446 94 + 1 AUGACCAUCUAUUAGCACGCCUCAAGGUUGGCAAACAGCCGAAGAAAAUAAGAAAACUCUUCAUUGUUUUCG-UUUCUGUUUGCUUUAGUGUUUG .............((((((((....))).(((((((((.....(((((((((((.....))).)))))))).-...)))))))))...))))).. ( -25.00) >DroEre_CAF1 113924 94 + 1 AUGACCAUCUAUUAGCACGCCUCAAGGUUGGCAAACAGCCGAAGAAAAUAAGAAAACUCUUCAUUGUUUUCG-UUACUGUUUGCUUUAGUGUUUG .............((((((((....))).(((((((((.....(((((((((((.....))).)))))))).-...)))))))))...))))).. ( -25.00) >DroYak_CAF1 119035 94 + 1 AUGACCAUCUAUUAGCACGCCUCAAGGUUGGCAAACAGCCGAAGAAAAUAAGAAAACUCUUCAUUGUUUUCG-UUUCUGUUUGCUUUAGUGUUUG .............((((((((....))).(((((((((.....(((((((((((.....))).)))))))).-...)))))))))...))))).. ( -25.00) >DroAna_CAF1 113891 95 + 1 AUAAAGCUCUAUUAGCACUCCCCAAGGUUAGCAAACAGUUGAAGAAAAUAAGAAAACUUUUCAUUGUUUUCGGCUAUUGUUUGCCGUAGUGUUUG ...((((.((((((((.((.....))))))(((((((((.(..(((((((((((.....))).))))))))..).))))))))).)))).)))). ( -24.70) >consensus AUGACCAUCUAUUAGCACGCCUCAAGGUUGGCAAACAGCCGAAGAAAAUAAGAAAACUCUUCAUUGUUUUCG_UUUCUGUUUGCUUUAGUGUUUG .............((((((((....))).(((((((((.....(((((((((((.....))).)))))))).....)))))))))...))))).. (-23.44 = -23.55 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:10 2006