Locus 1742

Sequence ID 2R_DroMel_CAF1
Location 6,560,350 – 6,560,449
Length 99
Max. P 0.754669
window2907

overview

Window 7

Location 6,560,350 – 6,560,449
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 90.48
Mean single sequence MFE -27.61
Consensus MFE -19.78
Energy contribution -19.26
Covariance contribution -0.52
Combinations/Pair 1.18
Mean z-score -2.28
Structure conservation index 0.72
SVM decision value 0.48
SVM RNA-class probability 0.754669
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6560350 99 + 20766785
ACAUUGAUAUGGCUCACAGUGGCUAUAUAUAGACGAAUUUGGCGAUGUGUAUGUACAUAGCUUCAGAUACCCAUUGAGUGUGAGGGCAUAUUGAUGAGU
.(((..(((((.((((((..((((((.((((.(((.(((....))).))).)))).))))))((((.......)))).))))).).)))))..)))... ( -26.80)
>DroSec_CAF1 112995 95 + 1
ACAUUGAUAUGGCUCACAGUGGCUAUAUAUAGACGAAUUUGGCGAUGUG----UACAUAGCUUCAGAUUCCCAUUGAGUGUAAGGGCAUAUUGAUGAGU
.(((..(((((.(((((((((((((....)))..(((((((((.(((..----..))).))..))))))))))))..)))...)).)))))..)))... ( -26.20)
>DroSim_CAF1 99158 95 + 1
ACAUUGAUAUGGCUCACAGUGGCUAUAUAUAGACGAAUUUGGCGAUGUG----UACAUAGCUUCAGAUACCCAUUGAGUGUAAGGGCAUAUUGAUGAGU
.(((..(((((.(((...(.((((((.((((.(((.......)).).))----)).)))))).)..((((.......))))..))))))))..)))... ( -23.50)
>DroEre_CAF1 113644 92 + 1
ACAUUGAUAUGGCUCACAGUGGCUAUAUAUAGACGAAUUUGCCGAAGUG----UACAUAGCUUUGGAUACCCAUUGCGUGUAGGGGUAUAUCGAUG---
.((((((((((.(((((..((((.................))))..)).----(((((.((..(((....)))..)))))))))).))))))))))--- ( -29.83)
>DroYak_CAF1 118739 95 + 1
ACAUUGAUAUGGCUCACAGUGGCUAUAUAUAGACGAAUUUGGCGAUGUG----UAUAUAGCUUCGCAUACCUAUUGCGUGAGAGGGUAUAUUGAUGAGU
.(((..(((((.(((((.(.(((((((((((.(((.......)).).))----))))))))).)(((.......))))))))....)))))..)))... ( -31.70)
>consensus
ACAUUGAUAUGGCUCACAGUGGCUAUAUAUAGACGAAUUUGGCGAUGUG____UACAUAGCUUCAGAUACCCAUUGAGUGUAAGGGCAUAUUGAUGAGU
.((((((((((.(((.(((((((((....)))....(((((((.(((((....))))).))..)))))..)))))).).....)).))))))))))... (-19.78 = -19.26 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:09 2006