Locus 1741

Sequence ID 2R_DroMel_CAF1
Location 6,558,311 – 6,558,410
Length 99
Max. P 0.891766
window2906

overview

Window 6

Location 6,558,311 – 6,558,410
Length 99
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 74.70
Mean single sequence MFE -20.82
Consensus MFE -14.84
Energy contribution -14.68
Covariance contribution -0.16
Combinations/Pair 1.18
Mean z-score -1.54
Structure conservation index 0.71
SVM decision value 0.97
SVM RNA-class probability 0.891766
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6558311 99 + 20766785
AUAAUUCUAGUUUGUU--UUUUUUUUAAUAAUUUGAAACAUAAAUACAUU-ACAA-AUUUUCUCAGUGUAAAGGCAAGGGCAUGUCAGCCAGCUGUUACUAAA
.......((((.((((--(...((((((....))))))...))))).)))-)...-...........((((.(((...(((......))).))).)))).... ( -14.30)
>DroSec_CAF1 110970 94 + 1
AUAAUUUUAGUUUGUAGGAUUUUACUAAUAAUUU-------AAAUACACU-ACAA-AUUUUCUCAGUGUAACGGCAAGGGCAUGCCAGCCAGCUGUUACUAAA
........(((((((((.((((............-------))))...))-))))-)))........((((((((...(((......))).)))))))).... ( -23.00)
>DroSim_CAF1 96882 101 + 1
AUAAUUUUAGUUUGUAGGAUUUUACUAAUAAUUUGAAACCUAAAUACACU-ACAA-AUUUUCUCAGUGUAGCGGCAAGGGCAUGCCAGCCAGCUGUUACUAAA
........(((((((((.((((...................))))...))-))))-)))........((((((((...(((......))).)))))))).... ( -22.51)
>DroEre_CAF1 111670 94 + 1
AAGCUUUUAGGUAGUUUGUAUAUACAAAUAAAU--------CGAAUUGCGCACAA-UUUCUCUGAGUGUAAUGGCAAGGGCAUGCCAGCCAGCUGUUACUAAA
..((((..((...((((((....))))))....--------.((((((....)))-)))))..))))((((((((...(((......))).)))))))).... ( -21.70)
>DroYak_CAF1 116635 93 + 1
ACAGUUUUGAGUAGUAUGGAAAUAUAA-GAAAU--------AGAAACACU-ACAGUUUUCCCUCAGUGUAGCGGCAAGGGCAUCCCAGCCAGCUGUUACUAAA
......(((((..((((....))))..-.....--------.(((((...-...)))))..))))).((((((((...(((......))).)))))))).... ( -22.60)
>consensus
AUAAUUUUAGUUUGUAGGAUUUUACUAAUAAUUU_______AAAUACACU_ACAA_AUUUUCUCAGUGUAACGGCAAGGGCAUGCCAGCCAGCUGUUACUAAA
...................................................................((((((((...(((......))).)))))))).... (-14.84 = -14.68 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:08 2006