Locus 1740

Sequence ID 2R_DroMel_CAF1
Location 6,555,262 – 6,555,357
Length 95
Max. P 0.964316
window2905

overview

Window 5

Location 6,555,262 – 6,555,357
Length 95
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 77.67
Mean single sequence MFE -24.43
Consensus MFE -11.26
Energy contribution -13.70
Covariance contribution 2.45
Combinations/Pair 1.04
Mean z-score -2.79
Structure conservation index 0.46
SVM decision value 1.57
SVM RNA-class probability 0.964316
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6555262 95 + 20766785
CCCUUGUUGUUAUUGUUCGACU----CGCCAUUGUUAU--UGUUGUUAAGCCAUUCAGCAGCAGUGGCAACAACAAUGACGACACUUUUACAGUCACAACA
....((((((.(((((......----.....(((((((--(((((((..(((((((....).)))))))))))))))))))).......))))).)))))) ( -29.57)
>DroPse_CAF1 105568 91 + 1
CU--C---CUUCCUUUCCCUCUCUCCCUCUUUUGUUGGUGUGUUGGUUAGCCAUUCAGCGGCA-----AACAACAAUGACGACACUUUUACAGUCUCCCAG
..--.---........................(((((...(((((....(((.......))).-----..)))))....)))))................. ( -14.00)
>DroSec_CAF1 107959 94 + 1
-CCUUGUUGUUAUUGUUCGACU----CGCCAUUGUUAU--UGUUGUUAAGCCAUUCAGCAGCAGUGGCAACAACAAUGACGACACUUUUACAGUCACAACA
-...((((((.(((((......----.....(((((((--(((((((..(((((((....).)))))))))))))))))))).......))))).)))))) ( -29.57)
>DroSim_CAF1 94096 95 + 1
CCCUUGUUGUUAUUGUUCGACU----CGCCAUUGUUAU--UGUUGUUAAGCCAUUCAGCAGCAGUGGCAACAACAAUGACGACACUUUUACAGUCACAACA
....((((((.(((((......----.....(((((((--(((((((..(((((((....).)))))))))))))))))))).......))))).)))))) ( -29.57)
>DroYak_CAF1 113456 94 + 1
C-CUUGUUGUUAUUGUUCGACU----CGCCAUUGUUAU--UGUUGUUAAGCCAUUCAGCAGCAGUGGCAACAACAAUGACGACACUUUUACAGUCGCAACA
.-..((((((.(((((......----.....(((((((--(((((((..(((((((....).)))))))))))))))))))).......))))).)))))) ( -29.87)
>DroPer_CAF1 104028 87 + 1
CU--C---AUUC----CCCUCUCUCCCUCUUUUGUUGGUGUGUUGGUUAGCCAUUCAGCGGCA-----AACAACAAUGACGACACUUUUACAGUCUCCCAG
..--.---....----................(((((...(((((....(((.......))).-----..)))))....)))))................. ( -14.00)
>consensus
CCCUUGUUGUUAUUGUUCGACU____CGCCAUUGUUAU__UGUUGUUAAGCCAUUCAGCAGCAGUGGCAACAACAAUGACGACACUUUUACAGUCACAACA
..................((((.........((((((...(((((((..(((((((....).))))))))))))).)))))).........))))...... (-11.26 = -13.70 +   2.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:07 2006