Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,432,684 – 1,432,804 |
Length | 120 |
Max. P | 0.586397 |
Location | 1,432,684 – 1,432,804 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -44.67 |
Consensus MFE | -43.19 |
Energy contribution | -43.20 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.07 |
Mean z-score | -1.50 |
Structure conservation index | 0.97 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1432684 120 - 20766785 GGCUGCAUGUGCACGAGCUCAAAAUGUGGCAUAUUUGCGGCAACCUGCUGGUAUUGCUGCAUUCCCGUGUACACGGACUCCAUUGGGUCCAGCUCCUCCUGCACCACCUGCGGAGUUACA ((((...((((((((.(((........))).....((((((((((....)))..)))))))....)))))))).((((((....)))))))))).((((.(((.....)))))))..... ( -45.50) >DroEre_CAF1 49233 120 - 1 GGCUGCAUGUGCACGAGCUCAAAGUGUGGCAUAUUCGCGGCGACCUGCUGGUAUUGCUGCAUGCCCGUGUACACGGACUCCAUUGGGUCCAGCUCCUCCUGCACCACCUGCGGAGUUACA ((((...((((((((.((.....(((..((((((..((((....))))..))).)))..))))).)))))))).((((((....)))))))))).((((.(((.....)))))))..... ( -47.70) >DroYak_CAF1 54290 120 - 1 GGCUGCAUGUGCCCGAGCUCAAAAUGUGGCAUAUUCGCGGCGACCUGCUGGUAUUGCUGCAUGCCCGUGUACACGGACUCCAUAGGGUCUAGCUCCUCUUGCACCACCUGCGGAGUUACA .((((((((((((...((.......)))))))))..)))))(((((..(((....((.....))((((....))))...)))..)))))(((((((....(((.....)))))))))).. ( -40.80) >consensus GGCUGCAUGUGCACGAGCUCAAAAUGUGGCAUAUUCGCGGCGACCUGCUGGUAUUGCUGCAUGCCCGUGUACACGGACUCCAUUGGGUCCAGCUCCUCCUGCACCACCUGCGGAGUUACA ((((...((((((((.((.....(((..((((((..((((....))))..))).)))..))))).)))))))).((((((....)))))))))).((((.(((.....)))))))..... (-43.19 = -43.20 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:13 2006