| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,555,021 – 6,555,118 |
| Length | 97 |
| Max. P | 0.670877 |
| Location | 6,555,021 – 6,555,118 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 84.91 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -23.86 |
| Energy contribution | -24.53 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.670877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6555021 97 - 20766785 -CUACCACCACCCCCUCUUUCGGCCGGCGGACGGACUUCUGCUCGUUGGCUUUUAUUGCUUCAGCUUCAGUUUCAGCCCUGAAGUAUGCAGCGC-UUUC -....................((((((((..(((....)))..))))))))......(((.(((((((((........))))))).)).)))..-.... ( -29.50) >DroPse_CAF1 105425 82 - 1 ----CCUCCACCACCCCUCCCCGCUGAUGGACGGAGCUCUGCUCGUUGGCUUUUAUUGCUUCA------------GCCCUGAAGUAUGCAACGC-UUGC ----..................((..(((..(((....)))..)))..))......(((((((------------....))))))).(((....-.))) ( -19.80) >DroSec_CAF1 107722 98 - 1 ACCACCACCACCCCCUCUGUCGGCCGGCGGACGGACUUCUGCUCGUUGGCUUUUAUUGCUUCAGCUUCAGUUUCAGCCCUGAAGUAUGCAGCGC-UCUC .....................((((((((..(((....)))..))))))))......(((.(((((((((........))))))).)).)))..-.... ( -29.50) >DroSim_CAF1 93866 99 - 1 ACCACCACCACCCCCUCUGUCGGCCGGCGGACGGACUUCUGCUCGUUGGCUUUUAUUGCUUUCACUUCAGUUUCAGCCCUGAAGUAUGCAGCGCCUCUG .....................((((((((..(((....)))..))))))))....((((....(((((((........)))))))..))))........ ( -27.60) >DroEre_CAF1 108435 96 - 1 --CACCAGCACGCCCUCCUUUGGCCGGCGGACGGACUUCUGCUCGUUGGCUUUUAUUGCUUCAGCUUCAGUUUCAGCCCUGAAGUAUGCAGCGC-UUUC --....(((............((((((((..(((....)))..))))))))......(((.(((((((((........))))))).)).)))))-)... ( -32.20) >DroYak_CAF1 113226 98 - 1 UACACCACCACCCCCUCUUUUGGCCGGCGGACGGACUUCUGCUCGUUGGCUUUUAUUGCUUCAGCUUCAGUUUCAGCCCUGAAGUAUGCAGCGC-UUUC .....................((((((((..(((....)))..))))))))......(((.(((((((((........))))))).)).)))..-.... ( -29.40) >consensus _CCACCACCACCCCCUCUUUCGGCCGGCGGACGGACUUCUGCUCGUUGGCUUUUAUUGCUUCAGCUUCAGUUUCAGCCCUGAAGUAUGCAGCGC_UUUC .....................((((((((..(((....)))..))))))))....((((....(((((((........)))))))..))))........ (-23.86 = -24.53 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:06 2006