Locus 1737

Sequence ID 2R_DroMel_CAF1
Location 6,544,562 – 6,544,655
Length 93
Max. P 0.945061
window2901

overview

Window 1

Location 6,544,562 – 6,544,655
Length 93
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 78.54
Mean single sequence MFE -16.70
Consensus MFE -13.26
Energy contribution -13.78
Covariance contribution 0.53
Combinations/Pair 1.05
Mean z-score -1.94
Structure conservation index 0.79
SVM decision value 1.35
SVM RNA-class probability 0.945061
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6544562 93 - 20766785
GUUCCCUCAUUUCCCGCAUUUCCCG---------CUUUUCCUCUUUGCAUUUUGCGAAAACUUUUGUAAAAUGACAAAAAUAUGCCCAUUAAAAUGAGCAAA
.....(((((((...((.......)---------)........(((((((((((((((....))))))))))).)))).............))))))).... ( -17.60)
>DroGri_CAF1 70928 84 - 1
-----CUCU-CGUCUGCAUG--CUA---------GGUUUCCUCUUUGCAU-UUGCGAAAACUUUUGUAAAAUGACAAAAAUAUGCCUAUUUAAAUGAGCAAA
-----..((-(((.......--.((---------(((......(((((((-(((((((....))))).))))).)))).....))))).....))))).... ( -14.02)
>DroEre_CAF1 98406 102 - 1
UUUCCCACUUUUCCCGCACUUCCCGCUUUUCCCGCUUUUCCUCUGUGCAUUUUGCGAAAACUUUUGUAAAAUGACAAAAAUAUGCCCAUUAAAAUGAGCAAA
...............((.......)).................(((.(((((((((((....))))))))))))))......(((.(((....))).))).. ( -15.20)
>DroYak_CAF1 102573 91 - 1
UU-CCCGCU-UACCCGCACUUUCUG---------CUUUUCCUCCUUGCAUUUUGCGAAAACUUUUGUAAAAUGACAAAAAUAUGCCCAUUAAAAUGAGCAAA
..-...(((-((...(((.....))---------).........((((((((((((((....))))))))))).))).................)))))... ( -17.80)
>DroMoj_CAF1 81898 81 - 1
-----GA----AUCUGAAUG--CUA---------CGUUUCCUCUUUGCAU-UUGCGAAAACUUUUGUAAAAUGACAAAAAUAUGCCCAUUAAAAUGAGCAAA
-----..----.......((--((.---------(((((....(((((..-..)))))...((((((......))))))............))))))))).. ( -12.90)
>DroAna_CAF1 97858 89 - 1
AC-CCCUCU-GGGCCGGACGCUUCG---------CC--UGCUCUUUGCAUUUUGCGAAAACUUUUGUAAAAUGACAAAAAUAUGCCCAUUAAAAUGAGCAAA
..-......-((((.((.((...))---------))--.))))(((((((((((((((....))))))))))).))))....(((.(((....))).))).. ( -22.70)
>consensus
_U_CCCUCU_UACCCGCACGU_CCG_________CUUUUCCUCUUUGCAUUUUGCGAAAACUUUUGUAAAAUGACAAAAAUAUGCCCAUUAAAAUGAGCAAA
...........................................(((((((((((((((....))))))))))).))))....(((.(((....))).))).. (-13.26 = -13.78 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:03 2006