Locus 1736

Sequence ID 2R_DroMel_CAF1
Location 6,535,632 – 6,535,725
Length 93
Max. P 0.775758
window2900

overview

Window 0

Location 6,535,632 – 6,535,725
Length 93
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 86.32
Mean single sequence MFE -24.10
Consensus MFE -17.96
Energy contribution -18.16
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.75
SVM decision value 0.54
SVM RNA-class probability 0.775758
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6535632 93 - 20766785
CCAAAGCCGCUUAAAAGCCGCAAGGCGCUGAAAGCCCCACAUACCUU-GAGGUCCUGCUCCUGCCUUGCCUUUUCGACCUCACACAUG----UACACA
........((((....(((....))).....))))...((((....(-((((((..((.........))......)))))))...)))----)..... ( -22.30)
>DroSec_CAF1 93490 93 - 1
CCAAAGCCGCUUAAAAGCCGCAAGGCGCUGAAAGCCCCACAUACCUU-GAGGUCCUGCUCCUGCC-UGCCUUCUCGACCUCACACAUGG---UACACA
.....(((((((....(((....))).....))))...........(-((((((..((.......-.))......))))))).....))---)..... ( -24.90)
>DroEre_CAF1 94516 96 - 1
CCAAAGCCGCUUAAAAGCCGCAAGGCGCUGAAAGCCCCACAUACCUU-GAGGUCCUGCUCCUGCC-CGCCUUUUCGACCCCACACAUGGCCACACACA
.....(((((((....(((....))).....))))............-(((((...((....)).-.)))))...............)))........ ( -21.90)
>DroYak_CAF1 98199 96 - 1
CCAAAGCCGCUUAAAAGCCGCAAGGCGCUGAAAGCCCCACAUACCUU-GAGGUCCUGCUCCUGCC-UGCCUUUUCGACCUCACACAUGUGCAUGUCUA
........((((....(((....))).....))))..(((((....(-((((((..((.......-.))......)))))))...)))))........ ( -25.40)
>DroAna_CAF1 93611 85 - 1
CCAAAGCCGCUUAAAAGCCGCAAGGCGCUGAAAGCCCAGAAUACCUUCGAGGUCCU-----------GCCUUUUCGACCUCACACAUGCACAGG--CA
.....(((((((....(((....))).....)))).............((((((..-----------........))))))...........))--). ( -26.00)
>consensus
CCAAAGCCGCUUAAAAGCCGCAAGGCGCUGAAAGCCCCACAUACCUU_GAGGUCCUGCUCCUGCC_UGCCUUUUCGACCUCACACAUGG_CAUACACA
........((((....(((....))).....)))).............((((((.....................))))))................. (-17.96 = -18.16 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:01 2006