Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,519,815 – 6,519,905 |
Length | 90 |
Max. P | 0.814734 |
Location | 6,519,815 – 6,519,905 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.89 |
Mean single sequence MFE | -16.02 |
Consensus MFE | -12.70 |
Energy contribution | -12.57 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.08 |
Mean z-score | -2.05 |
Structure conservation index | 0.79 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6519815 90 - 20766785 AGCUGCUGCUGAGU-UUCAAAAAACAAUCAGAGAAAUGGCAAAUUGCACAUUUCCGCAUGUAAAUGCACACACACACACACACACUUUAA-----A ........((((((-((....))))..)))).((((((((.....)).)))))).((((....)))).......................-----. ( -15.10) >DroPse_CAF1 85447 84 - 1 --------CAGAGUUUUCAAAAAACAAUCAGAGAGAUGGCAAAUUGCACAUUUCCGCAUGGAAAUGCACACAG----ACACAGACACAGACACAGA --------....((((((............(.((((((((.....)).)))))))((((....)))).....)----)...))))........... ( -15.40) >DroSim_CAF1 72316 86 - 1 AGCUGCUGCUGAGU-UUCAAAAAACAAUCAGAGAAAUGGCAAAUUGCACAUUUCCGCAUGUAAAUGCACACA----CACACACACUUUAA-----A ........((((((-((....))))..)))).((((((((.....)).)))))).((((....)))).....----..............-----. ( -15.10) >DroEre_CAF1 88025 85 - 1 AGCUGCUGCUGAGU-UUCAA-AAACAAUCAGAGAAAUGGCAAAUUGCACAUUUCCGCAUGUAAAUGCACACAC----ACACACACAUAAA-----A (((....)))....-.....-.........(.((((((((.....)).)))))))((((....))))......----.............-----. ( -14.40) >DroYak_CAF1 91369 82 - 1 AGCUGCUGCUGAGU-UUCAAAAAACAAUCAGAGAAAUGGCAAAUUGCACAUUUCCGCAUGUAAAUGCGCACAC--------ACACUGAAA-----A (((....)))..((-((....))))..((((.((((((((.....)).))))))(((((....))))).....--------...))))..-----. ( -19.80) >DroAna_CAF1 86655 82 - 1 AGCCGGAACCGAGU-UUCAAAAAACAAUCAGAGAAAUGGCAAAUUGCACAUUUCCGCAUGUAAAUGCACUCAC----ACACACACC---------C ..........((((-...............(.((((((((.....)).)))))))((((....))))))))..----.........---------. ( -16.30) >consensus AGCUGCUGCUGAGU_UUCAAAAAACAAUCAGAGAAAUGGCAAAUUGCACAUUUCCGCAUGUAAAUGCACACAC____ACACACACUUAAA_____A ..............................(.((((((((.....)).)))))))((((....))))............................. (-12.70 = -12.57 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:59 2006