Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,514,004 – 6,514,123 |
Length | 119 |
Max. P | 0.715325 |
Location | 6,514,004 – 6,514,123 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.25 |
Mean single sequence MFE | -24.18 |
Consensus MFE | -15.54 |
Energy contribution | -15.85 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.10 |
Mean z-score | -1.48 |
Structure conservation index | 0.64 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6514004 119 + 20766785 UCGUUCAGUGUGUGCU-UAAGUGUUUGUCUAACAUUUUGUGGCUUAUAACUAUCAUGGCUUAUGAUAUUGACCCAAAACAUGUUUAACAACGCAUUUUGUCUGUGCACAAAAACCGAAAA (((.....((((..(.-.((((((((((..(((((.((.(((.(((....(((((((...))))))).))).))).)).)))))..)))).)))))).....)..)))).....)))... ( -28.50) >DroPse_CAF1 79030 107 + 1 UCUUCC-------------AGUGCUUGUCUAACAUUUUGUGGCUUAUAACUAUCAUGGCUUAUGAUAUUGACCCAAAACAUGUUUAACAACGCAUUUUGUCUGAGCACAAGAGCCGAGAA ......-------------(((((((((..(((((.((.(((.(((....(((((((...))))))).))).))).)).)))))..)))).)))))...(((..((......))..))). ( -21.80) >DroGri_CAF1 56007 105 + 1 --G--CCGUGUUAUCG-GAAGUGUUUGUUUAACAUUUUGUGGCUUACAACUAUCAUGGCUUUUGAUAUUGACCCGAAACAUGUUUAACAACGCAUUUUGUCUGA----------UGGUAA --.--...((..((((-((((((((((((.(((((((((.((....(((.(((((.......)))))))).))))))..))))).))))).)))))...)))))----------)..)). ( -23.60) >DroWil_CAF1 102439 115 + 1 UCUUUCUCUGUCUGCUUUAAGUGUUUGUCUAACAUUUUGUGGCUUAUAACUAUCAUGGCUUAUGAUAUUGACCCAAAACAUGUUUAACAACGCAUUUUGUCUGCG-ACAU----ACAAAA ........((((.((...((((((((((..(((((.((.(((.(((....(((((((...))))))).))).))).)).)))))..)))).)))))).....)))-))).----...... ( -23.50) >DroMoj_CAF1 67829 107 + 1 --CCUCAAUGACAACA-GAAGUGCUUGUCUAACAUUUUGUCGGUUACAAAUAUCAAGGCUUAUGAUAUUGACCCAAAGCAUGUUUAACAACGCAUUUUGUCUAA----------AGGAAA --(((....(((((..-..(((((((((..(((((((((..(((((...((((((.......)))))))))))))))..)))))..)))).))))))))))...----------)))... ( -25.90) >DroPer_CAF1 76861 107 + 1 UCUUCC-------------AGUGCUUGUCUAACAUUUUGUGGCUUAUAACUAUCAUGGCUUAUGAUAUUGACCCAAAACAUGUUUAACAACGCAUUUUGUCUGAGCACAAGAGCCGAGAA ......-------------(((((((((..(((((.((.(((.(((....(((((((...))))))).))).))).)).)))))..)))).)))))...(((..((......))..))). ( -21.80) >consensus UCUUUC__UGU___C___AAGUGCUUGUCUAACAUUUUGUGGCUUAUAACUAUCAUGGCUUAUGAUAUUGACCCAAAACAUGUUUAACAACGCAUUUUGUCUGAG_ACAA____CGAAAA ..................((((((((((..(((((.((.(((.(((....((((((.....)))))).))).))).)).)))))..)))).))))))....................... (-15.54 = -15.85 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:58 2006