Locus 1731

Sequence ID 2R_DroMel_CAF1
Location 6,512,715 – 6,512,806
Length 91
Max. P 0.672408
window2895

overview

Window 5

Location 6,512,715 – 6,512,806
Length 91
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 83.28
Mean single sequence MFE -26.75
Consensus MFE -21.83
Energy contribution -21.86
Covariance contribution 0.03
Combinations/Pair 1.17
Mean z-score -1.65
Structure conservation index 0.82
SVM decision value 0.29
SVM RNA-class probability 0.672408
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6512715 91 - 20766785
AA-------GGAACAAGGAAAG------CCAUCGCAAUUUGCCUCUGCCGCACAAAUAACAUCAAGUUCAAAGCUAAUGGCGGAGACAGACAAUCUGGGUGGCA----
..-------............(------(((((((.....))((((((((.......(((.....))).........)))))))).(((.....))))))))).---- ( -24.59)
>DroSec_CAF1 79851 98 - 1
AAGGAACAAGGAACAAGGAAAG------CCAUCGCAAUUUGCCUCUGCCGCACAAAUAACAUCAAGUUCAAAGCUAAUGGCGGAGGCAGACAAUCUGGGUGGCA----
.....................(------(((((.((.(((((((((((((.......(((.....))).........))))))))))))).....)))))))).---- ( -30.19)
>DroSim_CAF1 66237 98 - 1
AAGGAACAAGGAACAAGGAAAG------CCAUCGCAAUUUGCCUCUGCCGCACAAAUAACAUCAAGUUCAAAGCUAAUGGCGGAGGCAGACAAUUUGGGUGGCA----
.....................(------(((((.((((((((((((((((.......(((.....))).........)))))))))))))....))))))))).---- ( -31.89)
>DroEre_CAF1 81446 91 - 1
-------AAGGAACAAGGGGAG------CCAUCGCAAUUUGCCUCUGCCGCACAAAUAACAUCAAGUUCAAAGCUAAUGGCGGGGGCAGACAAUCUGGGCGGGA----
-------..............(------((.......(((((((((((((.......(((.....))).........))))))))))))).......)))....---- ( -25.63)
>DroYak_CAF1 84162 102 - 1
CAGGAAAGAGGAACAAGGAAAG------CCAUCGCAAUUUGCCUCUGCCGCACAAAUAACAUCAAGUUCAAAGCUAAUGGCGGGGGCAGACAAUCUGGGUGGAAUGUG
......................------(((((.((.(((((((((((((.......(((.....))).........))))))))))))).....)))))))...... ( -25.29)
>DroAna_CAF1 79454 90 - 1
-------------CAAGCAAAGCUCCGGCUGGCGCAAUUUGCCUCUGCCGCACAAAUAACAUCAAGUUCAAAGCUAAUGGCUGGGGCAGGGUUUCUGGGUGGU-----
-------------((..((((((((((((.((((.....))))...))))...............((((..(((.....))).)))).)))))).))..))..----- ( -22.90)
>consensus
AA_____AAGGAACAAGGAAAG______CCAUCGCAAUUUGCCUCUGCCGCACAAAUAACAUCAAGUUCAAAGCUAAUGGCGGAGGCAGACAAUCUGGGUGGCA____
............................(((((.((.(((((((((((((.......(((.....))).........))))))))))))).....)))))))...... (-21.83 = -21.86 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:57 2006