| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,476,634 – 6,476,744 |
| Length | 110 |
| Max. P | 0.516887 |
| Location | 6,476,634 – 6,476,744 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 71.93 |
| Mean single sequence MFE | -19.81 |
| Consensus MFE | -12.62 |
| Energy contribution | -12.07 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6476634 110 - 20766785 ACCUUUCCCUUUCCCUUUCCCUUCAUUCAUCCUU---A---ACCCCGACCCCAUCACCAAUGUCUUAUGAGCGUUUCGGAUUCCGGCUUUGAUGGGUUUUAAUAAGGUUCAGAACG .........................(((..((((---(---.....((.(((((((..((((((....)).))))((((...))))...))))))).))...)))))....))).. ( -16.80) >DroSec_CAF1 44774 110 - 1 ACCUUUUCCUUUCCC------UUCAACCAUCCUCCUCAUCCGUCCCCACCCCAUUCCCACCGCUUUAUCAGCGGUUCGGAUUCCGGCUUUGAUGGGUUUUAAUAAGGUUCAGAACG (((((.......(((------.((((....((.....(((((................((((((.....)))))).)))))...))..)))).))).......)))))........ ( -23.47) >DroYak_CAF1 47446 97 - 1 ACCUUUUCCUUCACC------CCCA---------CAUAUCCAUCCCCACUC----CCCCCCGCUUUGUCCGCGGUUCGGAUUCCGGCUUUGAUGGGUUUUAAUAAGGUCCAGAACG ........((..(((------....---------...(((((((((...((----(...((((.......))))...)))....))....)))))))........)))..)).... ( -19.16) >consensus ACCUUUUCCUUUCCC______UUCA__CAUCCU_C__AUCCAUCCCCACCCCAU_CCCACCGCUUUAUCAGCGGUUCGGAUUCCGGCUUUGAUGGGUUUUAAUAAGGUUCAGAACG (((((.......(((............................................((((.......)))).((((...)))).......))).......)))))........ (-12.62 = -12.07 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:37 2006