Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,476,488 – 6,476,594 |
Length | 106 |
Max. P | 0.978669 |
Location | 6,476,488 – 6,476,594 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -28.55 |
Consensus MFE | -25.64 |
Energy contribution | -25.70 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.44 |
Structure conservation index | 0.90 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978669 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6476488 106 + 20766785 UGUCACACUUAUUUCUCGCUGUGUAAGCGCAUAAAGUCGGCCAGUAAGCAGGACAGCAUUAUCAUUGUAAUGCAUUUUGCUUAGCUCUGACUUGACUUUUAUGCAU .................(((.....)))((((((((((((.((((((((((((..(((((((....))))))).)))))))))...))).).)))).))))))).. ( -31.60) >DroSec_CAF1 44630 104 + 1 --UCAUACUUAUUUCUCCCGGUGUAAGCGCAUAAAGUCGGCCAGUAAGCAGGACAGCAUUAUCAUUGUAAUGCAUUUUGCUUAGCUCUGACUUGACUUUUAUGCAU --.....(((((.((....)).))))).((((((((((((.((((((((((((..(((((((....))))))).)))))))))...))).).)))).))))))).. ( -30.50) >DroEre_CAF1 42822 104 + 1 --CCACAAUUUUUUCUCGCGGUGUAGGCGCAUAAAGUCGGCCCGUAAGCAGGACAGCAUUAUCAUUGUAAUGCAUUUUGCUUAGCUCUGACUUGACUUUUAUGCAU --...............((.......))((((((((((((..(.(((((((((..(((((((....))))))).))))))))))..))))))......)))))).. ( -27.90) >DroYak_CAF1 47302 104 + 1 --CCACAAUCAUUUCUCCCCGUGUAAGCGCAUAAAGUCGGCCCGUAAGCACGACAGCAUUAUCAUUGUAAUGCAUUUUGCUUAGCUCUGACUUGACUUUUAUGCAU --..................(((((((.(....(((((((..(.((((((.((..(((((((....))))))).)).)))))))..)))))))..).))))))).. ( -24.20) >consensus __CCACAAUUAUUUCUCCCGGUGUAAGCGCAUAAAGUCGGCCAGUAAGCAGGACAGCAUUAUCAUUGUAAUGCAUUUUGCUUAGCUCUGACUUGACUUUUAUGCAU ....................(((((((.(....(((((((....(((((((((..(((((((....))))))).)))))))))...)))))))..).))))))).. (-25.64 = -25.70 + 0.06)
Location | 6,476,488 – 6,476,594 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -30.12 |
Consensus MFE | -24.71 |
Energy contribution | -25.52 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.06 |
Mean z-score | -2.72 |
Structure conservation index | 0.82 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934926 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6476488 106 - 20766785 AUGCAUAAAAGUCAAGUCAGAGCUAAGCAAAAUGCAUUACAAUGAUAAUGCUGUCCUGCUUACUGGCCGACUUUAUGCGCUUACACAGCGAGAAAUAAGUGUGACA ..(((((((.(((..(((((...((((((....((((((......)))))).....))))))))))).))))))))))(.((((((....(....)..))))))). ( -31.00) >DroSec_CAF1 44630 104 - 1 AUGCAUAAAAGUCAAGUCAGAGCUAAGCAAAAUGCAUUACAAUGAUAAUGCUGUCCUGCUUACUGGCCGACUUUAUGCGCUUACACCGGGAGAAAUAAGUAUGA-- ..(((((((.(((..(((((...((((((....((((((......)))))).....))))))))))).))))))))))(((((...(....)...)))))....-- ( -29.60) >DroEre_CAF1 42822 104 - 1 AUGCAUAAAAGUCAAGUCAGAGCUAAGCAAAAUGCAUUACAAUGAUAAUGCUGUCCUGCUUACGGGCCGACUUUAUGCGCCUACACCGCGAGAAAAAAUUGUGG-- ..(((((((.(((..(((...(.((((((....((((((......)))))).....))))))).))).)))))))))).......((((((.......))))))-- ( -29.90) >DroYak_CAF1 47302 104 - 1 AUGCAUAAAAGUCAAGUCAGAGCUAAGCAAAAUGCAUUACAAUGAUAAUGCUGUCGUGCUUACGGGCCGACUUUAUGCGCUUACACGGGGAGAAAUGAUUGUGG-- ..(((((((.(((..(((...(.((((((....((((((......)))))).....))))))).))).)))))))))).....(((((..(....)..))))).-- ( -30.00) >consensus AUGCAUAAAAGUCAAGUCAGAGCUAAGCAAAAUGCAUUACAAUGAUAAUGCUGUCCUGCUUACGGGCCGACUUUAUGCGCUUACACCGCGAGAAAUAAGUGUGA__ ..(((((((.(((..(((((...((((((....((((((......)))))).....))))))))))).))))))))))..((((((............)))))).. (-24.71 = -25.52 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:36 2006