Locus 1719

Sequence ID 2R_DroMel_CAF1
Location 6,475,578 – 6,475,674
Length 96
Max. P 0.780156
window2870

overview

Window 0

Location 6,475,578 – 6,475,674
Length 96
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 83.16
Mean single sequence MFE -25.70
Consensus MFE -19.44
Energy contribution -19.33
Covariance contribution -0.11
Combinations/Pair 1.14
Mean z-score -2.17
Structure conservation index 0.76
SVM decision value 0.55
SVM RNA-class probability 0.780156
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6475578 96 + 20766785
------CAUCUCUCU---GCCGCUCCUAGACGGCGAAAAUUGCAACUUUUGUGUCAAGCGCUAAAAUUACAGCGCAAAGAAUGAUGCAAAGGCAACAAAGCGAGA
------..((((.((---(((((.....).)))).....(((...(((((((((((.(((((........)))))......)))))))))))...))))).)))) ( -28.10)
>DroSec_CAF1 43704 96 + 1
------CAUCUCUCU---GCCGCUCCUAGCCGGCGAAAAUUGCAACUUUUGUGUCAAGCGCUAAAAUUACAGCGCAAAGAAUGAUGCAAAGGCAACAAAGCGAGA
------..((((.((---(((((.....).)))).....(((...(((((((((((.(((((........)))))......)))))))))))...))))).)))) ( -28.10)
>DroEre_CAF1 41923 98 + 1
AUGCCACAUCACUCG---GCAGCUUCUAGCCAGCGAAAAUUGCAACUUUUGUGUCAAGCGCUAAAAUUACAGCGCAAAGAAUGAUGCAGAGGCAACAAAGC----
.((((.........)---)))((((...(((.((((...))))....(((((((((.(((((........)))))......))))))))))))....))))---- ( -26.70)
>DroWil_CAF1 53599 87 + 1
------UCUUCCUUU---U-----UGGAGCCAGCGAAAAUUGCAACUGUUGUGUCAAGCGCUAAAAUUACAGCACAAAGAAUGGCGCAAAGGCAACAAAGC----
------.......((---(-----((..(((.((((...)))).....((((((((..((((........))).....)..)))))))).)))..))))).---- ( -19.80)
>DroYak_CAF1 46422 90 + 1
--------UCGCUCU---GCAGCUCCUAGCCGGCGAAAAUUGCAACUUUUGUGUCAAGCGCUAAAAUUACAGCGCAAAGAAUGACGCAGAGGCAACAAAGC----
--------(((((..---((........)).)))))...(((...(((((((((((.(((((........)))))......)))))))))))...)))...---- ( -26.40)
>DroAna_CAF1 43665 93 + 1
------UCUCACUCUAGGGUCGCUC--UGCCUGCGAAAAUUGCAACUUUUGUGUCAAGCGCUAAAAUUACAGCGCAAAGAAUGACGCAAAGGCAACAAAGC----
------.(((......)))..(((.--(((((((((...)))))...(((((((((.(((((........)))))......)))))))))))))....)))---- ( -25.10)
>consensus
______CAUCACUCU___GCCGCUCCUAGCCGGCGAAAAUUGCAACUUUUGUGUCAAGCGCUAAAAUUACAGCGCAAAGAAUGACGCAAAGGCAACAAAGC____
............................(((.((((...))))....(((((((((.(((((........)))))......))))))))))))............ (-19.44 = -19.33 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:34 2006