Locus 1718

Sequence ID 2R_DroMel_CAF1
Location 6,475,252 – 6,475,359
Length 107
Max. P 0.815716
window2869

overview

Window 9

Location 6,475,252 – 6,475,359
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 86.73
Mean single sequence MFE -27.02
Consensus MFE -18.04
Energy contribution -20.44
Covariance contribution 2.40
Combinations/Pair 1.08
Mean z-score -2.51
Structure conservation index 0.67
SVM decision value 0.66
SVM RNA-class probability 0.815716
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6475252 107 - 20766785
CUCAACCGUGAUCUGGCCACACUCGAGCCCCAUUCAAACAUUUUACAUUUGCACAACCAUCCUGCGGUCUUCCAGAUGGAAGGCCUUCGUUUGUCAAUGGCAUGAAU
......((((....((((......).)))((((((((((...........(((.........)))((((((((....))))))))...)))))..)))))))))... ( -29.10)
>DroSec_CAF1 43378 107 - 1
CUCAACCAUGCUCUGGCCACACUCGAGCCUCAUUCAAACAUUUUACAUUUGCACAACCAUCCUGCGGUCUUCCAGCUGGAAGGCCUUCGUUUGUCAAUGGCAUGAAU
......(((((...((((......).))).(((((((((...........(((.........)))((((((((....))))))))...)))))..)))))))))... ( -30.60)
>DroEre_CAF1 41575 107 - 1
CUCAACCAUGCUCUGGCCACACUCGAGCCUCAUUCAAACAUUUUACAUUUGCACAACCAUCCUGCGGUCUUCCAGAUGGAAGGCCUUCGUUUGUCAAUGGCAUGAAU
......(((((...((((......).))).(((((((((...........(((.........)))((((((((....))))))))...)))))..)))))))))... ( -30.60)
>DroYak_CAF1 46079 107 - 1
CUCAACCGUGCUCUGGCCACACUCGAGCCUCAUUCAAACAUUUUACAUUUGCACAACCAUCCUGCGGUCUUCCAGAUGGAAGGCCUUCGUUUGUCAAUGGCAUGAAU
......(((((...((((......).))).(((((((((...........(((.........)))((((((((....))))))))...)))))..)))))))))... ( -30.20)
>DroAna_CAF1 43348 86 - 1
CUCAACCGUGCUCUGGCCACACUCAAGCCUCGUUCAAACACUCAGCAUUUGCACAAUCAUCCUGCGGUCUUCCCGAU---------------------UGUAUGAAU
.......((((...(((.........)))..((....))...........)))).....((.(((((((.....)))---------------------)))).)).. ( -14.60)
>consensus
CUCAACCGUGCUCUGGCCACACUCGAGCCUCAUUCAAACAUUUUACAUUUGCACAACCAUCCUGCGGUCUUCCAGAUGGAAGGCCUUCGUUUGUCAAUGGCAUGAAU
......(((((...(((.........))).....(((((...........(((.........)))((((((((....))))))))...)))))......)))))... (-18.04 = -20.44 +   2.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:33 2006