Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,473,883 – 6,474,000 |
Length | 117 |
Max. P | 0.679739 |
Location | 6,473,883 – 6,474,000 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -36.15 |
Consensus MFE | -25.30 |
Energy contribution | -24.55 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.22 |
Mean z-score | -1.83 |
Structure conservation index | 0.70 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679739 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6473883 117 + 20766785 GAAAGGGGCGUAGUUGCCGGCCUGU--GUGUCAUGCAAAUGCAGCUAAUGUGUGUCCAACACUCAUGAGUCACAAAUCAUGGGCGGAGUGGAAACACGGCGAGAAAAAUGGGAUAUUAA ......((((....))))..(((((--...((.(((....)))(((...((((.((((.(.(((((((........))))))).)...)))).)))))))..))...)))))....... ( -36.20) >DroSec_CAF1 41994 117 + 1 GAAAGGGGCGUGGUGGCCGGCCUGU--GUGUCAUGCAAAUGCGGCUAAUGUGUGUCCAACACUCAUGAGUCACAAAUCAUGGGCGGAGUGGAAACACUGCGAGAAAAGUGGGAUAUUAA .......((((..((((((.(...(--((.....)))...)))))))))))((((((.((.(((((((........)))))))((.((((....)))).))......)).))))))... ( -38.30) >DroEre_CAF1 40259 115 + 1 GAAAGGGGCGUGGCAGCCGACCUGUGUGUGUCAUGCAAAUGCAGCUAAU----GUCCAACACUCAUGAGUCACAAAUUAUGGGCGCAGUGAGAGCACUGCGAGAAAAGUGGUGUAUGAA .....(((((((((....((((.....).))).(((....)))))).))----)))).((((.(((...((.((.....))..(((((((....))))))).))...)))))))..... ( -35.00) >DroYak_CAF1 44655 113 + 1 GAAAGGGGCGUGGCGGGCGACCUGU--GUGUCAUGCAAAUGCAGCUAAU----GUCCAGCACUCAUGAGUCACAAAUCAUGGGUGGAGUGGGAACACAGCGAGAAAAAUGGGGUAUGAA .......((((((((.((.....))--.))))))))...........((----..((..(((((((((........)))))))))..(((....))).............))..))... ( -35.10) >consensus GAAAGGGGCGUGGCGGCCGACCUGU__GUGUCAUGCAAAUGCAGCUAAU____GUCCAACACUCAUGAGUCACAAAUCAUGGGCGGAGUGGAAACACUGCGAGAAAAAUGGGAUAUGAA .....((((.((((....(((........))).(((....)))))))......))))....(((((((........)))))))((.((((....)))).)).................. (-25.30 = -24.55 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:32 2006