Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,473,724 – 6,473,830 |
Length | 106 |
Max. P | 0.543482 |
Location | 6,473,724 – 6,473,830 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 82.60 |
Mean single sequence MFE | -40.12 |
Consensus MFE | -23.13 |
Energy contribution | -22.69 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -2.00 |
Structure conservation index | 0.58 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543482 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6473724 106 - 20766785 AUAACAAGGAAAAGAGACAGCCAGAUGGCGAGCGAAAGAGAUGGCGGGCGA---------GGCUUCCUUGGCUUCGUGCAACUUCCGUUGCCUUCUGGUAAGUUGCC----UGCUUUCU ......(((((.((.(((.((((((.(((.((((.(((.(....)(.((((---------((((.....)))))))).)..))).))))))).))))))..)))..)----)..))))) ( -36.50) >DroSec_CAF1 41833 108 - 1 AUAACAAGGAAAAGAGACAGCCAGAUGGCGAGCGAAAGAGAGGGCAC--GC---------GGCUUCCUUGGCUUCGUGCAACUUCCGCUGCCUUCUGGUAAGUUGCCUGCCUGCUUUCU ......(((...((.(((.((((((.(((.((((.(((.....((((--(.---------((((.....)))).)))))..))).))))))).))))))..)))..)).)))....... ( -41.00) >DroEre_CAF1 40101 105 - 1 AUAACAAGGA-AAGAGACAGCUUGAUGGGGAGCGAAAGAGAGGGC---------AGCUCGUGCUGGCUUGGCUUCGUGCAACUUCCGCUGCCUUCUGGUAAGUUGCC----UGUUUUCU ......((((-((.((.(((((((..(((.((((.(((..(((.(---------(((....)))).))).((.....))..))).)))).))).....))))))).)----).)))))) ( -38.60) >DroYak_CAF1 44488 114 - 1 AUAACAAGGA-AAGAGACAGCUAGACGGGGAGCGAAAGAGAGAGCGCACGAGGCUUCCUGGGCUUCCUUGGCUUCGUGCAACUUCCGCUGCUUUCUGGUAAGUUGCC----UGUUUUCU ......((((-((.((.(((((...(((..((((...(..((...((((((((((....((....))..))))))))))..))..)..))))..)))...))))).)----).)))))) ( -44.40) >consensus AUAACAAGGA_AAGAGACAGCCAGAUGGCGAGCGAAAGAGAGGGCGC__GA_________GGCUUCCUUGGCUUCGUGCAACUUCCGCUGCCUUCUGGUAAGUUGCC____UGCUUUCU ..............(((.(((..........(((((.(((..(((................)))..)))...)))))((((((((((........))).)))))))......))).))) (-23.13 = -22.69 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:31 2006