Locus 1715

Sequence ID 2R_DroMel_CAF1
Location 6,472,846 – 6,472,953
Length 107
Max. P 0.687304
window2866

overview

Window 6

Location 6,472,846 – 6,472,953
Length 107
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 77.76
Mean single sequence MFE -28.40
Consensus MFE -17.67
Energy contribution -18.55
Covariance contribution 0.88
Combinations/Pair 1.08
Mean z-score -1.80
Structure conservation index 0.62
SVM decision value 0.32
SVM RNA-class probability 0.687304
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6472846 107 + 20766785
U---CUUGAGGGCAACUGAUUAAGAGUGACUAAUUACAGGUGAUAAAGCUUGGGAUGAGGA--GCUCUUAUGCUUUUUAAGAGUGACAAGUGAGCCAGAACUGAGUUUAUUU
(---((((((((((......(((((((..((.((..(((((......)))))..)).))..--)))))))))).)))))))).....((((((((((....)).)))))))) ( -30.10)
>DroSec_CAF1 40978 109 + 1
U---CUUGAGGGCAACUGAUUAAGAGUGACUAAUUACAGGUGAUAAAGCUUGUGAUGAGGAGAGUUCUUAUGCUUUUUAAGAGUGGCAAGUGAGCCAGAACUGAGGAUAUUU
(---(((.((..(..((....((((((..((.(((((((((......))))))))).))(((....)))..))))))..))..((((......)))))..)).))))..... ( -27.60)
>DroEre_CAF1 39105 108 + 1
UGCCCUUGAGGGCAACUGAUUAAGAAUGACUAAUUACAGGUAAUAAAGCUUGUGAUGAGCA--GCUCUUAUGCUUUCUU--AGUGGCAAGUGAGCACGAACUGUGGGUUUCU
.((((....))))((((.((..((..((.((.(((((((((......))))))))).))))--((((...((((.....--...))))...)))).....)))).))))... ( -31.30)
>DroYak_CAF1 43537 89 + 1
UGUCCUCGAGCGCAACUGAUUAAGAGUGGGUAAUUACAGGUAAUAAAGCUUGUGAUGUGGA--GCUCUUAUGCUUUCUU--AGUGGCCAGUGC-------------------
...........(((.(((..(((((((.....(((((((((......))))))))).....--))))))).(((.....--...)))))))))------------------- ( -24.60)
>consensus
U___CUUGAGGGCAACUGAUUAAGAGUGACUAAUUACAGGUAAUAAAGCUUGUGAUGAGGA__GCUCUUAUGCUUUCUA__AGUGGCAAGUGAGCCAGAACUGAGG_UAUUU
.......(((((((......(((((((..((.(((((((((......))))))))).))....))))))))))))))................................... (-17.67 = -18.55 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:30 2006