Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,462,311 – 6,462,406 |
Length | 95 |
Max. P | 0.821694 |
Location | 6,462,311 – 6,462,406 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 81.49 |
Mean single sequence MFE | -26.58 |
Consensus MFE | -17.17 |
Energy contribution | -17.17 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.15 |
Mean z-score | -2.30 |
Structure conservation index | 0.65 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821694 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6462311 95 + 20766785 GGGUA----------GGGAUA------GCGAGAAAGGUUGAGUAAAGGCAAACGCCAUCAUUCAACUUU---UCCGACACCAACGCAAAAUGCCAAAAGCGCUGCAACCGCAGA (.((.----------((....------.((.((((((((((((...(((....)))...))))))))))---))))...)).)).).....((.....)).((((....)))). ( -30.30) >DroSec_CAF1 37911 85 + 1 GGGUA--------------------------GAAAGGUUGAGUAAAGGCAAACGCCAUCAUUCAACUUU---UCCGACACCAACGCAAAAUGCCAAAAGCGCUGCAACCGCAGA ((((.--------------------------((((((((((((...(((....)))...))))))))))---))..)).))..(((............)))((((....)))). ( -27.00) >DroSim_CAF1 29290 85 + 1 GGGUA--------------------------GAAAGGUUGAGUAAAGGCAAACGCCAUCAUUCAACUUU---UCCGACACCAACGCAAAAUGCCAAAAGCGCUGCAACCGCAGA ((((.--------------------------((((((((((((...(((....)))...))))))))))---))..)).))..(((............)))((((....)))). ( -27.00) >DroEre_CAF1 36254 84 + 1 U-GGA--------------------------GAAAGGUUCGGUUAAGGCAAACGCCAUCAUUCAACUUU---UGCGACACCAACGCAAAAUGCCAAAAGCGCUGCAACCGCAGA .-...--------------------------....((((((((...(((....)))..........(((---((((.......))))))).((.....)))))).))))..... ( -18.80) >DroYak_CAF1 40480 84 + 1 G-GGA--------------------------GAAAGGUUGAGUUAAGGCAAACGCCAUCAUUCAACUUU---UGCGACACCAACGCAAAAUGCCAAAAGCGCUGCAACCGCAGA (-(.(--------------------------.(((((((((((...(((....)))...))))))))))---)(((.......)))....).)).......((((....)))). ( -24.10) >DroAna_CAF1 39068 114 + 1 GGAAAUCGGGCCGCAGGGGAAGGUGGUUCGGGGCAAGUUCGGUAAAGGCAAACGCCAUCAUUCAACUUUGUGUCCGACACCAACGCAAAAUGCCAGUAGCGUUGCAACCGCAGA ((...((((((.((((((...(((((((((((.....)))))....(((....)))))))))...))))))))))))...((((((............))))))...))..... ( -32.30) >consensus GGGUA__________________________GAAAGGUUGAGUAAAGGCAAACGCCAUCAUUCAACUUU___UCCGACACCAACGCAAAAUGCCAAAAGCGCUGCAACCGCAGA .................................((((((((((...(((....)))...))))))))))..............(((............)))((((....)))). (-17.17 = -17.17 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:29 2006