Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,462,076 – 6,462,176 |
Length | 100 |
Max. P | 0.781419 |
Location | 6,462,076 – 6,462,176 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 92.88 |
Mean single sequence MFE | -43.47 |
Consensus MFE | -35.73 |
Energy contribution | -36.40 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.54 |
Structure conservation index | 0.82 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781419 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6462076 100 + 20766785 GGCCAAAGACCAGUGACCGCAGUGACCGGAUCCGGAAACGGCUCACGAUUGGUGGCG-GGUGGUGGCGAAACGGUGGCGAGGUCAAGGGAG---AAGCAGGCCG ((((.....((..(((((...((.((((..((((....))((.(((.(((.(...).-))).)))))))..)))).))..)))))..))..---.....)))). ( -41.90) >DroSec_CAF1 37673 103 + 1 GGCCAAAGACCAGUGACCGCAGUGACCGGAUCCGGAAACGGCUCCCGAUUGGUGGCG-GGGGGUAGCGAAACGGUGGCGAGGUCAAGGGAGGAGAAGCAGGCCC ((((.....((..(((((...((.((((...(((....)))((((((........))-)))).........)))).))..)))))..)).(......).)))). ( -44.80) >DroSim_CAF1 29053 102 + 1 GGCCAAAGACCAGUGACCGCAGUGACCGGAUCCGGAAACGGCUGCCGAUUGGUGGCGAGGGGGUAGCGAAACGGUGGCGAGGUCAAGGAAGG--GAGCAGGCCC ((((.....((..(((((...((.((((..((((....))((((((..(((....)))...))))))))..)))).))..))))).))..(.--...).)))). ( -43.70) >consensus GGCCAAAGACCAGUGACCGCAGUGACCGGAUCCGGAAACGGCUCCCGAUUGGUGGCG_GGGGGUAGCGAAACGGUGGCGAGGUCAAGGGAGG__AAGCAGGCCC ((((.....((..(((((...((.((((((.(((....))).))....((.((.((......)).)).)).)))).))..)))))..)).(......).)))). (-35.73 = -36.40 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:28 2006