Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,459,792 – 6,459,899 |
Length | 107 |
Max. P | 0.664119 |
Location | 6,459,792 – 6,459,899 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 90.50 |
Mean single sequence MFE | -27.20 |
Consensus MFE | -22.48 |
Energy contribution | -22.80 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.11 |
Mean z-score | -1.42 |
Structure conservation index | 0.83 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664119 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6459792 107 - 20766785 GGCAGAUGCAGUUUGCCGUUUGCUGUUGAAGCUUACAGCUUUCGAUUCACUCUGCCAUUUAGUCGGUUGUUUACUGUUUUCCAGAUUCCGCCUGCUGUUUGAUUUCA ((((((((.((((.((.((..(((.....)))..)).))....)))))).))))))...((((.(((.(..(.(((.....))))..).))).)))).......... ( -26.90) >DroSec_CAF1 35417 107 - 1 GGCAGAUUCAGUUUGCCGUUUGCUGUCGAAGCUUUCAGCUUUCGACCCACUAUGCCAUUUAGUCGGUUGUUUACUGUUUUCCAGAUUCCGCCUGCUGUUUGAUUUCA (((((((...))))))).......((((((((.....)).)))))).........((..((((.(((.(..(.(((.....))))..).))).))))..))...... ( -26.80) >DroSim_CAF1 26785 107 - 1 GGCAGAUGCAGUUUGCCGUUUGCUGUCGAAGCUUACAGCUUUCGACCCACUCUGCCAUUUAGUCGGUUGUUUACUGUUUUCCAGAUUCCGCCUGCUGUUUGAUUUCA ((((((.((((........)))).((((((((.....)).))))))....))))))...((((.(((.(..(.(((.....))))..).))).)))).......... ( -30.00) >DroEre_CAF1 33770 100 - 1 GGCAGAUGCAGUU-------UACUAUUGAAGCUUACAGCUUUGGAGCCACUCUGCCAUUUAGUCGGUUGUUUACUGUUUUCCAGAUUCCGCCUGCUGUUUGAUUUCA ((((((.((((..-------..)).(..((((.....))))..).))...))))))...((((.(((.(..(.(((.....))))..).))).)))).......... ( -24.90) >DroYak_CAF1 37433 100 - 1 GGCAGAUGCAGUU-------UGCUGUGAAAGCUUACAGCUAUCGACCCACUCUGCCGUUUAGUCGGUUGUUUACUGUUUUCCAGAUUCCGCCUGCUAUUUGAUUUCA ((((((((..(((-------.(((((((....)))))))....))).)).))))))...((((.(((.(..(.(((.....))))..).))).)))).......... ( -27.40) >consensus GGCAGAUGCAGUUUGCCGUUUGCUGUCGAAGCUUACAGCUUUCGACCCACUCUGCCAUUUAGUCGGUUGUUUACUGUUUUCCAGAUUCCGCCUGCUGUUUGAUUUCA ((((((.(((((.........))))).(((((.....)))))........))))))...((((.(((.(..(.(((.....))))..).))).)))).......... (-22.48 = -22.80 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:24 2006