Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,428,911 – 1,429,030 |
Length | 119 |
Max. P | 0.926589 |
Location | 1,428,911 – 1,429,030 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.83 |
Mean single sequence MFE | -23.34 |
Consensus MFE | -22.54 |
Energy contribution | -22.26 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -1.17 |
Structure conservation index | 0.97 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1428911 119 + 20766785 U-UUUUUGCCCUUUGUUUGUUGUUUCUAUCGGUGUUGCUGUUGCUAAGGAAAAUCUUUUGUUUGCACAGCUUUUUGCAAUUUUUGCCACUAAUUGAAAUAGAAUUUCUGCUUUGUUGUAG .-.................(((((((.((..(((..(((((.((.((.(((.....))).)).))))))).....(((.....))))))..)).))))))).....((((......)))) ( -22.50) >DroSec_CAF1 47372 119 + 1 U-UUCUUGCCCUUUGUUUGCUGUUUCCAUCGGUGUUGCUGUUGCUAAGGAAAAUCUUUUGUUUGCGCAGCUUUUUGCAAUUUUUGCCACUAAUUGAAAUAGAAUUUCUGCUUUGUUGUAG .-.................(((((((.((..(((..(((((.((.((.(((.....))).)).))))))).....(((.....))))))..)).))))))).....((((......)))) ( -24.40) >DroSim_CAF1 52423 120 + 1 UUUUCUUGCCCUUUGUUUGCUGUUUCUAUCGGUGUUGCUGUUGCUAAGGAAAAUCUUUUGUUUGCACAGCUUUUUGCAAUUUUUGCCACUAAUUGAAAUAGAAUUUCUGCUUUGUUGUAG ...................(((((((.((..(((..(((((.((.((.(((.....))).)).))))))).....(((.....))))))..)).))))))).....((((......)))) ( -24.80) >DroEre_CAF1 45493 120 + 1 UUUUCUUGCCCUUUGUUUGCUGUUUCUAUCGGUGUUGCUGUUGCUAAGGAAAAUCUUUUGUUUGCACAGCUUUUUGCAAUUUUUGCCACUAAUUGAAAUAGAAUUUCUGCUUUGUUGUAG ...................(((((((.((..(((..(((((.((.((.(((.....))).)).))))))).....(((.....))))))..)).))))))).....((((......)))) ( -24.80) >DroYak_CAF1 49991 115 + 1 UUUUCUUGCC----GUUUGCUGUUUCUAUCGGUGUUGCUAUAGCUAAAGAAAAUCUUUUGUUUCCACAGCGU-UUGCAAUUUUUGCCACUAAUUGAAAUAGAAUUUCUGCUUUGUUGUAG ..........----.....(((((((.((..(((((((....(((...((((........))))...)))..-..)))).......)))..)).))))))).....((((......)))) ( -20.21) >consensus UUUUCUUGCCCUUUGUUUGCUGUUUCUAUCGGUGUUGCUGUUGCUAAGGAAAAUCUUUUGUUUGCACAGCUUUUUGCAAUUUUUGCCACUAAUUGAAAUAGAAUUUCUGCUUUGUUGUAG ...................(((((((.((..(((..(((((.((.((((.....)))).))....))))).....(((.....))))))..)).))))))).....((((......)))) (-22.54 = -22.26 + -0.28)
Location | 1,428,911 – 1,429,030 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.83 |
Mean single sequence MFE | -18.70 |
Consensus MFE | -15.57 |
Energy contribution | -15.81 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.82 |
Structure conservation index | 0.83 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1428911 119 - 20766785 CUACAACAAAGCAGAAAUUCUAUUUCAAUUAGUGGCAAAAAUUGCAAAAAGCUGUGCAAACAAAAGAUUUUCCUUAGCAACAGCAACACCGAUAGAAACAACAAACAAAGGGCAAAAA-A ..........((((.....)).((((.((..((((((.....))).....(((((((...................)).)))))..)))..)).)))).............)).....-. ( -18.01) >DroSec_CAF1 47372 119 - 1 CUACAACAAAGCAGAAAUUCUAUUUCAAUUAGUGGCAAAAAUUGCAAAAAGCUGCGCAAACAAAAGAUUUUCCUUAGCAACAGCAACACCGAUGGAAACAGCAAACAAAGGGCAAGAA-A ..........((.(((((...))))).....(..((..............))..))).............(((((.((....))......(.((....)).).....)))))......-. ( -15.94) >DroSim_CAF1 52423 120 - 1 CUACAACAAAGCAGAAAUUCUAUUUCAAUUAGUGGCAAAAAUUGCAAAAAGCUGUGCAAACAAAAGAUUUUCCUUAGCAACAGCAACACCGAUAGAAACAGCAAACAAAGGGCAAGAAAA .................((((.((((.((..((((((.....))).....(((((((...................)).)))))..)))..)).))))..((.........)).)))).. ( -18.71) >DroEre_CAF1 45493 120 - 1 CUACAACAAAGCAGAAAUUCUAUUUCAAUUAGUGGCAAAAAUUGCAAAAAGCUGUGCAAACAAAAGAUUUUCCUUAGCAACAGCAACACCGAUAGAAACAGCAAACAAAGGGCAAGAAAA .................((((.((((.((..((((((.....))).....(((((((...................)).)))))..)))..)).))))..((.........)).)))).. ( -18.71) >DroYak_CAF1 49991 115 - 1 CUACAACAAAGCAGAAAUUCUAUUUCAAUUAGUGGCAAAAAUUGCAA-ACGCUGUGGAAACAAAAGAUUUUCUUUAGCUAUAGCAACACCGAUAGAAACAGCAAAC----GGCAAGAAAA ..........((.......((.((((.((..((((((.....)))..-..(((((((.....((((.....))))..)))))))..)))..)).)))).)).....----.))....... ( -22.12) >consensus CUACAACAAAGCAGAAAUUCUAUUUCAAUUAGUGGCAAAAAUUGCAAAAAGCUGUGCAAACAAAAGAUUUUCCUUAGCAACAGCAACACCGAUAGAAACAGCAAACAAAGGGCAAGAAAA ..........((((.....)).((((.((..((((((.....))).....(((((((...................)).)))))..)))..)).)))).............))....... (-15.57 = -15.81 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:02 2006