Locus 1709

Sequence ID 2R_DroMel_CAF1
Location 6,458,916 – 6,459,014
Length 98
Max. P 0.601430
window2859

overview

Window 9

Location 6,458,916 – 6,459,014
Length 98
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 79.99
Mean single sequence MFE -20.32
Consensus MFE -16.07
Energy contribution -15.60
Covariance contribution -0.47
Combinations/Pair 1.26
Mean z-score -1.12
Structure conservation index 0.79
SVM decision value 0.14
SVM RNA-class probability 0.601430
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6458916 98 + 20766785
UUGCAAUAU-UUUGAUCGCAUUAU---GAGCCAAAACUUUUAGCCAUAAUGCAAUUAUAAUUGAAUUCUUUUGUCUUUUGCGAAGGAAGGCAACUUCGGCCU
...((((..-..((((.(((((((---(.((.((.....)).)))))))))).))))..))))..(((((((((.....)))))))))(((.......))). ( -24.10)
>DroPse_CAF1 35908 96 + 1
UUCUAAUAUCCUUGAUCGUCUUACGA-GAACUAGAAACUUUAGCCGUAAUGCAAUUAUAAUUGAAUUCUUUUGU----AGCCGAGGAAAGCGGCUUAUACU-
........((((((...((.(((((.-(..(((((...))))))))))).))..((((((..(....)..))))----)).))))))..............- ( -15.20)
>DroSim_CAF1 25910 98 + 1
UUGCAAUAU-UUUGAUCGCAUUAU---GAGCCGAAACUUUUAGCCAUAAUGCAAUUAUAAUUGAAUUCUUUUGUCUCUUGCGAAGGAAGGCAACUUCGGCCU
...((((..-..((((.(((((((---(.((..(.....)..)))))))))).))))..))))..(((((((((.....)))))))))(((.......))). ( -25.20)
>DroEre_CAF1 32877 96 + 1
UUGCAAUAU-UUUGAUCGCAUUAUGAUGAGCCGAAACUUUUAGCCAUAAUGCAAUUAUAAUUGAAUUCUUUUGUCUUUGGCGAAGGAAGGCAACUUC-----
((((.....-..((((.((((((((.((((........))))..)))))))).))))........(((((((((.....))))))))).))))....----- ( -23.00)
>DroYak_CAF1 36508 101 + 1
UUGCAAUAU-UUUGAUCGCAUUAUGAUGAGCCAAAACUUUUAGCCAUAAUGCAAUUAUAAUUGAAUUCUUUUGUCUUUGGCAAAGCAAGGCAACUUCUUCCU
((((.....-..((((.((((((((.((((........))))..)))))))).))))............(((((.....)))))))))(....)........ ( -18.40)
>DroPer_CAF1 34465 96 + 1
UUCUAAUAUCCUUGAUCGUCUUACGA-GAACUAGAAACUUUGGCCGUAAUGCAAUUAUAAUUGAGUUCUUUUGU----AGCCGAGGAAAGCGGCUUAUAUU-
........((((((...((..((.((-(((((..........((......))...........))))))).)).----.))))))))..............- ( -16.00)
>consensus
UUGCAAUAU_UUUGAUCGCAUUAUGA_GAGCCAAAACUUUUAGCCAUAAUGCAAUUAUAAUUGAAUUCUUUUGUCUUUAGCGAAGGAAGGCAACUUCUACC_
............((((.((((((((..(((........)))...)))))))).))))...(((..(((((((((.....)))))))))..)))......... (-16.07 = -15.60 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:23 2006