Locus 1704

Sequence ID 2R_DroMel_CAF1
Location 6,447,107 – 6,447,201
Length 94
Max. P 0.806802
window2846

overview

Window 6

Location 6,447,107 – 6,447,201
Length 94
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 81.51
Mean single sequence MFE -17.64
Consensus MFE -12.72
Energy contribution -14.25
Covariance contribution 1.53
Combinations/Pair 1.06
Mean z-score -1.93
Structure conservation index 0.72
SVM decision value 0.63
SVM RNA-class probability 0.806802
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6447107 94 - 20766785
UCUCUUUGAACAGAGCUUAACAUAAUGAGCUCAAAUUAAAAUCUUGUUAAAAGUGCAAAAGGCGCAGACACCGAAGACAAAAA-A---AAAGGAGCGU
.((((((.....(((((((......)))))))...........(((((....((((.....)))).(....)...)))))...-.---.))))))... ( -19.20)
>DroVir_CAF1 14212 76 - 1
CGCCUUUGAGCG--GCUUAACAUAAUGAGCUCAAAUUAAAAUCUUGUUAAAAGUGCAU------------GCAAAAUAUAAAAA-----ACUGAC---
.((((((.((((--(((((......))))))..............))).)))).))..------------..............-----......--- (  -9.23)
>DroSec_CAF1 22873 95 - 1
UCUCUUUGAACAGAGCUUAACAUAAUGAGCUCAAAUUAAAAUCUUGUUAAAAGUGCAAAAGGCGCAGACACCGAAGACAAAAAAA---AAAGGAGCGU
.((((((.....(((((((......)))))))...........(((((....((((.....)))).(....)...))))).....---.))))))... ( -19.20)
>DroEre_CAF1 21210 98 - 1
UCUCUUUGAACAGAGCUUAACAUAAUGAGCUCAAAUUAAAAUCUUGUUAAAAGUGCAAAAGGCGCAGACACCGAAGACAAAAAAAAAGAAAGGAGCGU
.((((((.....(((((((......)))))))...........(((((....((((.....)))).(....)...))))).........))))))... ( -19.20)
>DroYak_CAF1 24459 93 - 1
UCUCUUUGAACAGAGCUUAACAUAAUGAGCUCAAAUUAAAAUCUUGUUAAAAGUGCAAAAGGCGCAGACACCGAAGACAAAAAA-----AAGGAGCUU
.((((((.....(((((((......)))))))...........(((((....((((.....)))).(....)...)))))....-----))))))... ( -19.20)
>DroAna_CAF1 19745 85 - 1
UCUCUUUUAGCGGAGCUUAACAUAAUGAGCUCAAAUUAAAAUCUUGUUAAAAGUGCAAAAGGCGCAGACACCGACGAGGAAGAAA-------------
..(((((.....(((((((......)))))))..........((((((....((((.....)))).(....))))))))))))..------------- ( -19.80)
>consensus
UCUCUUUGAACAGAGCUUAACAUAAUGAGCUCAAAUUAAAAUCUUGUUAAAAGUGCAAAAGGCGCAGACACCGAAGACAAAAAAA____AAGGAGCGU
..((((((....(((((((......)))))))....................((((.....))))......))))))..................... (-12.72 = -14.25 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:11 2006