Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,432,298 – 6,432,394 |
Length | 96 |
Max. P | 0.593576 |
Location | 6,432,298 – 6,432,394 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 91.99 |
Mean single sequence MFE | -15.12 |
Consensus MFE | -12.62 |
Energy contribution | -13.26 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.04 |
Mean z-score | -1.32 |
Structure conservation index | 0.83 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6432298 96 - 20766785 AAAUAAACUCGCAUU----CCAAAUAAGGAAACUCAACCUUAGGUUACUUUAAUUAAAAUCAUAUUAGACAAACCUCAAAUGGCAGCACUUUAUGCUCAC ..........((.((----((......))))..........(((((..((((((.........))))))..)))))......))((((.....))))... ( -12.60) >DroSec_CAF1 6856 100 - 1 AAAUGAACUCGCACUCGGGCCAAAUAAGGAAACUCAACCUUAGGUUACUUUAAUUAAAAUCAUAUUAGACAAACCUCAAAUGGCAGCACUUUAUGCUCAC ..................((((..(((((........)))))((((..((((((.........))))))..)))).....))))((((.....))))... ( -16.50) >DroSim_CAF1 6514 100 - 1 AAAUGAACUCGCACUCGGGCCAAAUAAGGAAACUCCACCUUAGUUUACUUUAAUUAAAAUCAUAUUAGACAAACCUCAAAUGGCAGCACUUUAUGCUCAC ..................((((..(((((........)))))((((..((((((.........)))))).))))......))))((((.....))))... ( -13.10) >DroEre_CAF1 6433 99 - 1 AAAGAGGCUCGCACUCAGGCCAAAUAAGGAAAGUCAACCUUAGGUUACUUUCAUUAAAAUCAUAUUAGACAAACCUCA-AUGGCAGCACUUUAUGCUCAC ...(((.......)))..((((......((((((.((((...))))))))))...............((......)).-.))))((((.....))))... ( -18.90) >DroYak_CAF1 6645 99 - 1 AAAUAAACUUGCACUCAGGCCGAAUAAGGAAACUCAACCUCAGGUUACUUUAAUUAAAAUCAUAUUAGACAAACCUCA-AUGGCAGCACUUUAUGCUCAU ..................((((....((....)).......(((((..((((((.........))))))..)))))..-.))))((((.....))))... ( -14.50) >consensus AAAUAAACUCGCACUCAGGCCAAAUAAGGAAACUCAACCUUAGGUUACUUUAAUUAAAAUCAUAUUAGACAAACCUCAAAUGGCAGCACUUUAUGCUCAC ..................((((..(((((........)))))((((..((((((.........))))))..)))).....))))((((.....))))... (-12.62 = -13.26 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:04 2006