Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,428,296 – 1,428,486 |
Length | 190 |
Max. P | 0.994612 |
Location | 1,428,296 – 1,428,406 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.75 |
Mean single sequence MFE | -36.93 |
Consensus MFE | -30.82 |
Energy contribution | -31.22 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.19 |
Mean z-score | -1.43 |
Structure conservation index | 0.83 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709300 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1428296 110 + 20766785 CGCCC----------GGGACUUCACCACUCCACAAUGCGUCUACCGCGCACUUUUCCAGCGCUUUGGCUCUGGGCCGUGCUACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACAC .((((----------((((.............(((.(((.....)))((((...(((((.((....)).)))))..)))).....)))(((......))).))))))))........... ( -36.10) >DroSec_CAF1 46750 119 + 1 CGCCCGCUCCGCGCAGGGACUUCACCACUCCACAAUGCGUCUGCCGCGCACUUUUCCAGCGCUUUGGCUCUG-GCCAUGCUACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACAC .((((.....(((((.(((.........)))....))))).((((((((.........))))...((...((-((((.........))))))...))))))....))))........... ( -40.00) >DroSim_CAF1 51800 120 + 1 CGCCCGCUCCGCGCAGGGACUUCACCACUCCACAAUGCGUCUGCCGCGCAUUUUUCCAGCGCUUUGGCUCUGGGCCGUGCUACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACAC .((((.....(((((.(((.........)))....))))).((((((((.........))))..(((((..(((........)))..))))).....))))....))))........... ( -41.10) >DroEre_CAF1 44885 119 + 1 CGCCCGCUCCGCGCGAGGACCUCGCCACU-CACAAUGCGUCCACCGCGCACUUUUCCAGCGCUUUGGCUCUGGGCCGUGCUACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACAG .((((.....(((((.(((((........-......).))))..)))))......((((.((....)).))))((((.((((....))))......)))).....))))........... ( -37.84) >DroYak_CAF1 49400 120 + 1 CGCCCGCUCCGCGCGAGGACUUCACCACUCCACAAUGCGUCUACCGCGCACUUAUCCAGCGCUUUGGUUCUGGGCCCUGCUACCCUUGGCUAUCCCCGGCAUUCUGUGCUAUCCAAACAC (((.((...)).))).(((................(((((.....))))).......(((((...(((.(((((....((((....))))....))))).)))..))))).)))...... ( -29.60) >consensus CGCCCGCUCCGCGCAGGGACUUCACCACUCCACAAUGCGUCUACCGCGCACUUUUCCAGCGCUUUGGCUCUGGGCCGUGCUACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACAC .((((........(((((..................(((.....)))((((...(((((.((....)).)))))..))))...)))))(((......))).....))))........... (-30.82 = -31.22 + 0.40)
Location | 1,428,326 – 1,428,446 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.67 |
Mean single sequence MFE | -41.38 |
Consensus MFE | -35.32 |
Energy contribution | -36.20 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.07 |
Mean z-score | -2.22 |
Structure conservation index | 0.85 |
SVM decision value | 2.49 |
SVM RNA-class probability | 0.994612 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1428326 120 + 20766785 CUACCGCGCACUUUUCCAGCGCUUUGGCUCUGGGCCGUGCUACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACACCCAGUCACAGCCGGCACUGGUCACCUAUGUGACGACCUCG ....(((((((...(((((.((....)).)))))..))))......((((((...(((((...(((((...........))))).....)))))...)))))).....)))......... ( -41.30) >DroSec_CAF1 46790 119 + 1 CUGCCGCGCACUUUUCCAGCGCUUUGGCUCUG-GCCAUGCUACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACACCCAGCCACAGCCGGCACUGGUCACCUAUGUGACCACCUCG .((((((((.........))))...((((.((-((((.........)))))).....(((....((((...........)))))))..)))))))).(((((((....)))))))..... ( -44.30) >DroSim_CAF1 51840 120 + 1 CUGCCGCGCAUUUUUCCAGCGCUUUGGCUCUGGGCCGUGCUACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACACCCAGCCACAGCCGGCACUGGUCACCUAUGUGACCACCUCG .((((((((.........))))...((((.(((((((.((((....))))......))))...(((((...........)))))))).)))))))).(((((((....)))))))..... ( -45.80) >DroEre_CAF1 44924 120 + 1 CCACCGCGCACUUUUCCAGCGCUUUGGCUCUGGGCCGUGCUACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACAGCCAGGCACCGCCGGCGCUGGUCACCUAUAUGACCACCUCG .....((((.......(((.((....)).)))(((.(((((.......(((......)))......((((........)))).))))).))).))))((((((......))))))..... ( -43.50) >DroYak_CAF1 49440 120 + 1 CUACCGCGCACUUAUCCAGCGCUUUGGUUCUGGGCCCUGCUACCCUUGGCUAUCCCCGGCAUUCUGUGCUAUCCAAACACCCAGCCACAGCCGGCACUGGUCAGCUAUGUGACCACCUCG .....((((.........))))(((((....(((....((((....))))....)))(((((...)))))..)))))......(((......)))..((((((......))))))..... ( -32.00) >consensus CUACCGCGCACUUUUCCAGCGCUUUGGCUCUGGGCCGUGCUACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACACCCAGCCACAGCCGGCACUGGUCACCUAUGUGACCACCUCG .....((((.........))))..(((((..(((........)))..)))))...(((((...(((((...........))))).....)))))...(((((((....)))))))..... (-35.32 = -36.20 + 0.88)
Location | 1,428,326 – 1,428,446 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.67 |
Mean single sequence MFE | -51.40 |
Consensus MFE | -43.10 |
Energy contribution | -43.62 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.12 |
Mean z-score | -2.15 |
Structure conservation index | 0.84 |
SVM decision value | 2.09 |
SVM RNA-class probability | 0.987632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1428326 120 - 20766785 CGAGGUCGUCACAUAGGUGACCAGUGCCGGCUGUGACUGGGUGUUUGGAUAGCCCAGAAUGCCGGGGGUGGCCAAGGGUAGCACGGCCCAGAGCCAAAGCGCUGGAAAAGUGCGCGGUAG ...((((..(.....)..))))..((((((((.((.((((((.........))))))...((((...((.(((...))).)).)))).)).))))...(((((.....)))))..)))). ( -49.60) >DroSec_CAF1 46790 119 - 1 CGAGGUGGUCACAUAGGUGACCAGUGCCGGCUGUGGCUGGGUGUUUGGAUAGCCCAGAAUGCCGGGGGUGGCCAAGGGUAGCAUGGC-CAGAGCCAAAGCGCUGGAAAAGUGCGCGGCAG .....(((((((....))))))).((((((((.(((((..((.(((((...((((.(.....)..))))..)))))....))..)))-)).))))...(((((.....)))))..)))). ( -54.80) >DroSim_CAF1 51840 120 - 1 CGAGGUGGUCACAUAGGUGACCAGUGCCGGCUGUGGCUGGGUGUUUGGAUAGCCCAGAAUGCCGGGGGUGGCCAAGGGUAGCACGGCCCAGAGCCAAAGCGCUGGAAAAAUGCGCGGCAG .....(((((((....))))))).((((((((.(((((((((.........))))))...((((...((.(((...))).)).))))))).))))...((((.........)))))))). ( -56.00) >DroEre_CAF1 44924 120 - 1 CGAGGUGGUCAUAUAGGUGACCAGCGCCGGCGGUGCCUGGCUGUUUGGAUAGCCCAGAAUGCCGGGGGUGGCCAAGGGUAGCACGGCCCAGAGCCAAAGCGCUGGAAAAGUGCGCGGUGG ...(.(((((((....))))))).)((((((.((.((((((..(((((.....)))))..)))))).)).))).......((((...((((.((....)).))))....))))..))).. ( -53.80) >DroYak_CAF1 49440 120 - 1 CGAGGUGGUCACAUAGCUGACCAGUGCCGGCUGUGGCUGGGUGUUUGGAUAGCACAGAAUGCCGGGGAUAGCCAAGGGUAGCAGGGCCCAGAACCAAAGCGCUGGAUAAGUGCGCGGUAG ...((((((((......)))))...)))((((((..((((...((((.......))))...))))..))))))..((((......))))...(((...(((((.....)))))..))).. ( -42.80) >consensus CGAGGUGGUCACAUAGGUGACCAGUGCCGGCUGUGGCUGGGUGUUUGGAUAGCCCAGAAUGCCGGGGGUGGCCAAGGGUAGCACGGCCCAGAGCCAAAGCGCUGGAAAAGUGCGCGGUAG ...(((((((((....))))))..(.(((((.....((((((.........))))))...))))).)...)))..((((......))))...(((...(((((.....)))))..))).. (-43.10 = -43.62 + 0.52)
Location | 1,428,366 – 1,428,486 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -39.24 |
Consensus MFE | -32.02 |
Energy contribution | -32.70 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.07 |
Mean z-score | -2.00 |
Structure conservation index | 0.82 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956873 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1428366 120 + 20766785 UACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACACCCAGUCACAGCCGGCACUGGUCACCUAUGUGACGACCUCGUCGUCGUCCAGUCAGCGGGGCCACUCCGCCAGUCCGCACC ......((((((...(((((...(((((...........))))).....)))))...))))))....((.((((((......))))))))....(((((((......)))...))))... ( -43.40) >DroSec_CAF1 46829 120 + 1 UACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACACCCAGCCACAGCCGGCACUGGUCACCUAUGUGACCACCUCGUCGUCGUCCAGUCAGCGGAGCCACUCCGCCAGUCCGCACA .......(((.....(((((...(((((...........))))).....)))))...(((((((....)))))))....)))((((..(.....((((((...))))))..)..)).)). ( -37.30) >DroSim_CAF1 51880 120 + 1 UACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACACCCAGCCACAGCCGGCACUGGUCACCUAUGUGACCACCUCGUCGUCGUCCAGCCAGCGGAGCCACUCCGCCAGUCCGCACC ......((((.....(((((...(((((...........))))).....)))))...(((((((....)))))))...............))))((((((...))))))........... ( -39.30) >DroEre_CAF1 44964 120 + 1 UACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACAGCCAGGCACCGCCGGCGCUGGUCACCUAUAUGACCACCUCGUCGACGUCCAGUCAGCGGAGCCACUCCGCCAGUCCGCACC .....(((((.......(((....(((.....)))....))).(((.((((.((((.((((((......))))))...))))(((.....))).)))).))).....)))))........ ( -41.50) >DroYak_CAF1 49480 120 + 1 UACCCUUGGCUAUCCCCGGCAUUCUGUGCUAUCCAAACACCCAGCCACAGCCGGCACUGGUCAGCUAUGUGACCACCUCGACGAAGUCAAGUCAGCGGAGCCACUCCGCCAGUUCAAUCC ....(((((((.((.(((((....((((((............)).)))))))))...((((((......)))))).......)))))))))...((((((...))))))........... ( -34.70) >consensus UACCCUUGGCCACCCCCGGCAUUCUGGGCUAUCCAAACACCCAGCCACAGCCGGCACUGGUCACCUAUGUGACCACCUCGUCGUCGUCCAGUCAGCGGAGCCACUCCGCCAGUCCGCACC ......((((.....(((((...(((((...........))))).....)))))...(((((((....)))))))...............))))((((((...))))))........... (-32.02 = -32.70 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:00 2006