| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,429,895 – 6,430,002 |
| Length | 107 |
| Max. P | 0.856413 |
| Location | 6,429,895 – 6,430,002 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 81.23 |
| Mean single sequence MFE | -16.97 |
| Consensus MFE | -11.32 |
| Energy contribution | -11.66 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.856413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6429895 107 - 20766785 AACAGCAGGCGGCUGGAAAAUGAAGGAUAAA--AAAUGAAAUAAGCAUUACCAGUUCGACGAAAAAAAAAAAAAAAAAAAUGAGUGAGCUGGAAAGUUGGGGAUUAUUA ..((((.....))))................--.(((((....(((.((.(((((((.((.......................))))))))))).))).....))))). ( -16.60) >DroSim_CAF1 4110 107 - 1 AACAGCAGGCGGCUGGAAAAUGUAGGAUAAA--AAAUGAAAUAAGCAUUACCAGUUCGAGGAAAAAAUUUAAAAAAAAAAUGAGUGAGCUGGAAAGUUGGGGAUUAUUA ..((((.....))))................--.(((((....(((.((.((((((((........((((.......))))...)))))))))).))).....))))). ( -15.90) >DroEre_CAF1 4039 99 - 1 AACAGCAGGCGGCUGGAAAAUGAAAAAAAAAACAAGUGCUAUAAGUAUAGCCAGUUCGACGAGGAA----------AAAAAGAGGGAGCUGCAAAGUUGGGCAUUAUUA ..((((..((((((.....................(.(((((....))))))..(((......)))----------..........))))))...)))).......... ( -18.40) >consensus AACAGCAGGCGGCUGGAAAAUGAAGGAUAAA__AAAUGAAAUAAGCAUUACCAGUUCGACGAAAAAA___AAAAAAAAAAUGAGUGAGCUGGAAAGUUGGGGAUUAUUA ..((((.....))))...................................(((((((............................)))))))................. (-11.32 = -11.66 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:03 2006