Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,424,179 – 6,424,277 |
Length | 98 |
Max. P | 0.517656 |
Location | 6,424,179 – 6,424,277 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 79.65 |
Mean single sequence MFE | -24.30 |
Consensus MFE | -12.60 |
Energy contribution | -12.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.05 |
Mean z-score | -1.94 |
Structure conservation index | 0.52 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517656 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6424179 98 - 20766785 CGGCUCUGUUGCAUAUUUGUUGCAUAAUGCCUUAUAAACUUAUGCACUGGCACAUUGUUGACCAGUUGU-CCGGAAUCUCUACACCGCCAUA---UAUCCCG .(((..((((((((((((((.((.....))...)))))..))))))((((.((((((.....))).)))-)))).......)))..)))...---....... ( -20.90) >DroPse_CAF1 4685 93 - 1 CAGCUCUGUUGCAUAUUUGUUGCAUAAUGCC-----AACUUAUGCACUGGCACAUUGUUGACCAGUCGU-CUGGCAUCUGGCAACUGGCAUCAGGCAUC--- ..((.(((.(((......(((((...(((((-----(....(((.(((((((......)).))))))))-.))))))...)))))..))).)))))...--- ( -32.90) >DroSec_CAF1 4578 96 - 1 CGGCUC-GUUGCAUAUUUGUUGCAUAUUGCCUUAUAAACUUAUGCACUGGCACAU-GUUGACCAGUUGU-CCGGAAUCUCUCCAACGCCAUA---UAUCCCG .(((..-...((((((((((.((.....))...)))))..)))))(((((((...-..)).)))))...-..(((.....)))...)))...---....... ( -20.60) >DroEre_CAF1 4716 98 - 1 CGGCUCUGUUGCAUAUUUGUUGCAUAAUGCCUUAUAAACUUAUGCACUGGCACAUUGUUGACCAGUUGU-CCGGAAUCUCUCCACCGCCAUA---UAUCCCC .(((......((((((((((.((.....))...)))))..)))))(((((((......)).)))))...-..(((.....)))...)))...---....... ( -20.80) >DroAna_CAF1 10650 80 - 1 AAGCUCUGUUGCAUAUUUGUUGCAUAAUGCC-----AACUUAUGCACUGGCACAUUGUUGACCAGUUCCCCCGGAAUCUAUC-----------------UCA ....((((..(((((...(((((.....).)-----))).)))))(((((((......)).))))).....)))).......-----------------... ( -17.30) >DroPer_CAF1 11705 93 - 1 CAGCUCUGUUGCAUAUUUGUUGCAUAAUGCC-----AACUUAUGCACUGGCACAUUGUUGACCAGUCGU-CUGGCAUCUGGCAACUGGCAACUGGCAUC--- ..(((..(((((......(((((...(((((-----(....(((.(((((((......)).))))))))-.))))))...)))))..))))).)))...--- ( -33.30) >consensus CAGCUCUGUUGCAUAUUUGUUGCAUAAUGCC_____AACUUAUGCACUGGCACAUUGUUGACCAGUUGU_CCGGAAUCUCUCCACCGCCAUA___UAUCCC_ (((.......(((((...(((((.....))......))).)))))(((((((......)).)))))....)))............................. (-12.60 = -12.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:00 2006