Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,418,027 – 6,418,130 |
Length | 103 |
Max. P | 0.948083 |
Location | 6,418,027 – 6,418,130 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.01 |
Mean single sequence MFE | -24.16 |
Consensus MFE | -16.40 |
Energy contribution | -17.64 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.51 |
Structure conservation index | 0.68 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948083 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6418027 103 + 20766785 -----------GCCCAUGCCAUGCAAUUAUUUGUAUAGGAAUUUAAAUUGAAUGUCAGUCUGUUUGUUUCCAUAACAUACACACUCGCACUCGCA------CUCGCACUCGCACUCUCGC -----------((.....((((((((....)))))).))..........((.(((.(((.(((.((((.....)))).))).))).))).)))).------...((....))........ ( -20.00) >DroSec_CAF1 14142 91 + 1 -----------GCCCAUGCCAUGCAAUUAUUUGUAUAGGAAUUUAAAUUGAAUGUCAGUCUGUUUGUUUCCAUAACAUACACACUGGCA------------------CUCGCACUCUCGC -----------((.....((((((((....)))))).))..........((.(((((((.(((.((((.....)))).))).)))))))------------------.))))........ ( -24.00) >DroSim_CAF1 16279 91 + 1 -----------GCCCAUGCCAUGCAAUUAUUUGUAUAGGAAUUUAAAUUGAAUGUCAGUCUGUUUGUUUCCAUAACAUACACACUGGCA------------------CUCGCACUCUCGC -----------((.....((((((((....)))))).))..........((.(((((((.(((.((((.....)))).))).)))))))------------------.))))........ ( -24.00) >DroEre_CAF1 12717 93 + 1 -----------GCCCAUGCCAUGCAAUUAUUUGUAUAGGAAUUUAAAUUGAAUGUCAGUCUGUUUGUUUCCAUAACACACACAC----------------ACUGCCACUCACACUCUCGC -----------.......((((((((....)))))).)).........(((.((.((((.(((.(((.........))).))).----------------)))).)).)))......... ( -16.00) >DroYak_CAF1 13154 120 + 1 CCCAUGCCCAUGCCCAUGCCGUGCAAUUAUUUGUAUAGGAAUUUAAAUUGAAUGUCAGUCUGUUUGUUUCCAUAACAUACACACUGGCACUGGCACUGGCUCUGGCACUCGCACUCUCGC ....((((...(((..((((((((((....))))))................(((((((.(((.((((.....)))).))).)))))))..))))..)))...))))............. ( -36.80) >consensus ___________GCCCAUGCCAUGCAAUUAUUUGUAUAGGAAUUUAAAUUGAAUGUCAGUCUGUUUGUUUCCAUAACAUACACACUGGCA____________CU__CACUCGCACUCUCGC ...........((.....((((((((....)))))).)).............(((((((.(((.((((.....)))).))).))))))).....................))........ (-16.40 = -17.64 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:51 2006