| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 6,417,299 – 6,417,419 |
| Length | 120 |
| Max. P | 0.998877 |
| Location | 6,417,299 – 6,417,419 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.66 |
| Mean single sequence MFE | -45.50 |
| Consensus MFE | -41.48 |
| Energy contribution | -41.48 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.91 |
| SVM decision value | 3.26 |
| SVM RNA-class probability | 0.998877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6417299 120 + 20766785 GUCCUUGUGGCUGUGCGGUCGUGGCUCGUCGUCCUGUGCGUGCGCUGCAUUGGGAAAUUCGCUCGAAAUGGCAUUUAUUUUCGGUUUAGCUGAUGAUGAGCCACGGAUAAUGGCGUGGGG ..(((..((.((((....(((((((((((((((..((....))((((.((((..((....(((......))).....))..)))).)))).)))))))))))))))...))))))..))) ( -46.10) >DroSec_CAF1 13444 120 + 1 GUCCUUGUGGCUCUGCGGUCGUGGCUCGUCGUCCUGUGCGUGCGCUGCAUUGGGAAAUUCGCUCGAAAUGGCAUUUAUUUUCGGUUUAGCUGAUGAUGAGCCACGGAUAAUGGCGUGGGG ..(((..((.(.......(((((((((((((((..((....))((((.((((..((....(((......))).....))..)))).)))).))))))))))))))).....).))..))) ( -44.70) >DroSim_CAF1 15587 120 + 1 GUCCUUGUGGCUGUGCGGUCGUGGCUCGUCGUCCUGUGCGUGCGCUGCAUUGGGAAAUUCGCUCGAAAUGGCAUUUAUUUUCGGUUUAGCUGAUGAUGAGCCACGGAUAAUGGCGUAGGG ..(((....(((((....(((((((((((((((..((....))((((.((((..((....(((......))).....))..)))).)))).)))))))))))))))...)))))..))). ( -44.30) >DroEre_CAF1 11975 112 + 1 GUCCUUGU--------GGUCGUGGCUCGUCGUCCUGUGCGUGCGCUGCAUUGAGAAAUUCGCUAGAAAUGGCAUUUAUUUUCGGUUUAGCUGAUGAUGAGCCACGGAUAAUGGCGUGGGG ..(((..(--------(.(((((((((((((((..((....))((((.((((((((....((((....)))).....)))))))).)))).))))))))))))))).......))..))) ( -45.00) >DroYak_CAF1 12235 118 + 1 GUCCUUGUGGCUGU--GGUCGUGGCUCGUCGUCCUGUGCGUGCGCUGCAUUGAGAAAUUCGUUGGAAAUGGCAUUUAUUUUCGGUUUAGCUGAUGAUGAGCCACGGAUAAUGGCGCGGGG ..(((((((.((((--..(((((((((((((((..((....))((((.((((((((....(((......))).....)))))))).)))).)))))))))))))))...))))))))))) ( -47.40) >consensus GUCCUUGUGGCUGUGCGGUCGUGGCUCGUCGUCCUGUGCGUGCGCUGCAUUGGGAAAUUCGCUCGAAAUGGCAUUUAUUUUCGGUUUAGCUGAUGAUGAGCCACGGAUAAUGGCGUGGGG ..(((..((.(.......(((((((((((((((..((....))((((.((((((((....(((......))).....)))))))).)))).))))))))))))))).....).))..))) (-41.48 = -41.48 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:50 2006