Locus 1693

Sequence ID 2R_DroMel_CAF1
Location 6,416,498 – 6,416,618
Length 120
Max. P 0.999306
window2822

overview

Window 2

Location 6,416,498 – 6,416,618
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.73
Mean single sequence MFE -23.02
Consensus MFE -20.28
Energy contribution -20.84
Covariance contribution 0.56
Combinations/Pair 1.07
Mean z-score -2.49
Structure conservation index 0.88
SVM decision value 3.50
SVM RNA-class probability 0.999306
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6416498 120 - 20766785
UGGUGGUGUCGUGCUUCCUACAAUAUUUUUGCAUUUAUAAUGCAAUUCAUCGUUCAUUUUUCAUACUUGCACAAAGUGGAUUUUUAUUAGAUUCCCUUUAUAUUCGCCACACUGCCCCUU
.((..((((.((((..............((((((.....))))))......((...........))..))))((((.(((.(((....))).))))))).........))))..)).... ( -24.60)
>DroSec_CAF1 12622 120 - 1
UGGUGGUGUCGUGCUUCCUACAAUAUUUUUGCAUUUAUAAUGCAAUUCAUCGUUCAUUUUUCAUACUUGCACAAAGUGGAUUUUUAUUAGAUUCCCUUUAUAUUCGCCGCACUGCCCCUU
.((..((((.((((..............((((((.....))))))......((...........))..))))((((.(((.(((....))).))))))).........))))..)).... ( -24.90)
>DroSim_CAF1 14763 120 - 1
UGGUGGUGUCGUGCUUCCUACAAUAUUUUUGCAUUUAUAAUGCAAUUCAUCGUUCAUUUUUCAUACUUGCACAAAGUGGAUUUUUAUUAGAUUCCCUUUAUAUUCGCCACACUGCCCCUU
.((..((((.((((..............((((((.....))))))......((...........))..))))((((.(((.(((....))).))))))).........))))..)).... ( -24.60)
>DroEre_CAF1 11263 113 - 1
U---GGUGUCGUGCUUCCUGCAAUAUUUUUGCAUUUAUAAUGCAAUUCAUCGUUCAUUUUUCAUACUUGCGCAAAGUGGAUUUUUAUUAGAUUCCCUUUAUACUCGCCACUUUUCC----
(---((((..((((....(((((.....))))).....((((.(((.....)))))))..........))))((((.(((.(((....))).))))))).....))))).......---- ( -20.30)
>DroYak_CAF1 11545 117 - 1
U---GGUGUCGUGCUUCCUGCAAUAUUUUUGCAUUUAUAAUGCAAUUCAUCGUUCAUUUUUCAUACUUGCACAAAGUGGAUUUUUAUUAGAUUCCCUUUAUACUCGCCACUUUUCCCCCU
(---((((..((((....(((((.....))))).....((((.(((.....)))))))..........))))((((.(((.(((....))).))))))).....)))))........... ( -20.70)
>consensus
UGGUGGUGUCGUGCUUCCUACAAUAUUUUUGCAUUUAUAAUGCAAUUCAUCGUUCAUUUUUCAUACUUGCACAAAGUGGAUUUUUAUUAGAUUCCCUUUAUAUUCGCCACACUGCCCCUU
..((((((..((((..............((((((.....))))))......((...........))..))))((((.(((.(((....))).))))))).....)))))).......... (-20.28 = -20.84 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:49 2006