Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,415,564 – 6,415,667 |
Length | 103 |
Max. P | 0.866041 |
Location | 6,415,564 – 6,415,667 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 77.83 |
Mean single sequence MFE | -25.82 |
Consensus MFE | -11.02 |
Energy contribution | -12.27 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.21 |
Mean z-score | -3.07 |
Structure conservation index | 0.43 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866041 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6415564 103 + 20766785 UUAUUUUCGACACCCAUUGUUAAUGCAAUCAAAAUGUGUUAAGCAUACAUGUAUGUAUGUAUAUAC--------AUAUGU--GCUCCCCAGCUCACGUUUGGUGACCCCGCAA ..........((((.(((((....)))))..(((((((...((((((.((((((((....))))))--------)).)))--)))........)))))))))))......... ( -24.80) >DroSec_CAF1 11515 107 + 1 UGAAUUUCGUCACCCAUUGUUAAUGCAAUCAAAAUGUGUUAAGCAUACAUGUAUGUACAUACAUAC----AUAUAUGUGU--GCUCCCCAGCUCACGUUUGGUGACCCCGCAA ........((((((.(((((....)))))..(((((((...((((((((((((((((......)))----))))))))))--)))........)))))))))))))....... ( -36.00) >DroSim_CAF1 13659 99 + 1 UUAUUUUCGUCACCCAUUGUUAAUGCAAUCAAAAUGUGUUAAGCAUAAAUGUAUGUAC------------AUAUAUGUGU--GCUCCCCAGCUCACGUUUGGUGACCCCGCAA ........((((((.(((((....)))))..(((((((...((((((.((((((....------------)))))).)))--)))........)))))))))))))....... ( -25.30) >DroEre_CAF1 10151 99 + 1 UUAUUUGCGACAC-CAUUUUUAAUGCAAUCAAAAUGUGAUAAACAUAUGUAU------------ACAUAUGUAUUUAUGUAU-UCCCCCAGCACACGUUUUGUGACCCCGUAA ....(((((....-(((.....)))....(((((((((....(((((((...------------.))))))).....(((..-.......))))))))))))......))))) ( -17.20) >consensus UUAUUUUCGACACCCAUUGUUAAUGCAAUCAAAAUGUGUUAAGCAUACAUGUAUGUAC______AC____AUAUAUAUGU__GCUCCCCAGCUCACGUUUGGUGACCCCGCAA ........((((((.(((((....)))))..(((((((....(((((.((((..................)))).)))))..((......)).)))))))))))))....... (-11.02 = -12.27 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:47 2006