Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,428,099 – 1,428,219 |
Length | 120 |
Max. P | 0.997473 |
Location | 1,428,099 – 1,428,219 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.00 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -24.84 |
Energy contribution | -25.40 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -2.14 |
Structure conservation index | 0.92 |
SVM decision value | 2.87 |
SVM RNA-class probability | 0.997473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1428099 120 - 20766785 GGCUCACUGAAUCCGAUUGGUGCUUGGUGUCGAAGGACGAUGCAUAAACAUCAAGAAAAAGCUGCAAAGUGGAAUAAAAAACUAAUUAAUGAAAUGUUAAUGAAGGCGAGCGUAAAGAAU .((((.((...((((....((((((...(((....)))((((......))))......)))).))....))))...........((((((.....))))))...)).))))......... ( -26.60) >DroSec_CAF1 46553 120 - 1 GGCUCACUGAAUCCGAUUGGUGCUUGGUGUCGAAGGACGCUGCAUAAACAUCAAGAAAAAGCUGCAAAGUGGAAUAAAAAACUAAUUAAUGAAAUGUUAAUGAAGGCGAGCGUAAAGAAU .((((.((...((((((..((((..((((((....))))))))))....)))........(((....))))))...........((((((.....))))))...)).))))......... ( -28.40) >DroSim_CAF1 51603 120 - 1 GGCUCACUGAAUCCGAUUGGUGCUUGGUGUCGAAGGACGCUGCAUAAACAUCAAGAAAAAGCUGCAAAGUGGAAUAAAAAACUAAUUAAUGAAAUGUUAAUGAAGGCGAGCGUAAAGAAU .((((.((...((((((..((((..((((((....))))))))))....)))........(((....))))))...........((((((.....))))))...)).))))......... ( -28.40) >DroEre_CAF1 44686 119 - 1 GGCUCACUGAAUCCGAUUGGUGCUUAGUGUCGAAGGACGCUGCAUAAACAUCAAGAAAAAGCUGCAAAGUGGAAUAAAAAACUAAUUAAUGAAAUGUUAAUGAAGGCGAGCGAA-AGAAU .((((.((...((((((..((((..((((((....))))))))))....)))........(((....))))))...........((((((.....))))))...)).))))...-..... ( -28.40) >DroYak_CAF1 49206 117 - 1 GCCUCACUGAAUCCGAUU---GCUUAGUGUCGAAGGACGCUGCAUAAACAUCAAGAAAAAGCUGCAAAGUGGAAUAAAAAACUAAUUAAUGAAAUGUUAAUGAAGGCGAGCGAAAAGAAU (((((......((((.((---((.(((((((....)))))))...........((......))))))..))))...........((((((.....))))))).))))............. ( -23.80) >consensus GGCUCACUGAAUCCGAUUGGUGCUUGGUGUCGAAGGACGCUGCAUAAACAUCAAGAAAAAGCUGCAAAGUGGAAUAAAAAACUAAUUAAUGAAAUGUUAAUGAAGGCGAGCGUAAAGAAU .((((.((...((((((..((((..((((((....))))))))))....)))........(((....))))))...........((((((.....))))))...)).))))......... (-24.84 = -25.40 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:57 2006