Locus 1688

Sequence ID 2R_DroMel_CAF1
Location 6,396,816 – 6,396,918
Length 102
Max. P 0.713170
window2813

overview

Window 3

Location 6,396,816 – 6,396,918
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 78.82
Mean single sequence MFE -32.55
Consensus MFE -17.34
Energy contribution -17.32
Covariance contribution -0.02
Combinations/Pair 1.50
Mean z-score -2.01
Structure conservation index 0.53
SVM decision value 0.38
SVM RNA-class probability 0.713170
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 6396816 102 - 20766785
UUUGGUUGCUAUUCCAGGUAUUGUCUGCUCAUCGGCAAAAUGCUCUACCUGCACCCAGCAGUUGGAGCGGAUUUGAAAGCGAUCCAAUAUGUUGCCGUAGAA
(((((........))))).....(((((.....(((((...((((((.((((.....)))).))))))(((((.......)))))......)))))))))). ( -32.00)
>DroPse_CAF1 39087 102 - 1
CUUGGUGGCUAUGGCGGGUAUGGGCUGUUCAUCGGCGAAAUGUUCCAGUUUGAUCCAGCAGUUGGAUCGAAUGCGAAACCGGUCCAGAACAUUGCUAUAGAA
........(((((((((((.((((((((((......)))...(((..(((((((((((...)))))))))))..)))..)))))))..)).))))))))).. ( -33.60)
>DroSec_CAF1 37747 102 - 1
UUUUGUUGCUAUUCCAGGUAUUGUCUGCUCAUCGGCAAAAUGCUCCACCUGCACCCAGCAGUUGGAGCACAUUUGAAAGCGAUCCAAUAUGUUGCCGUAGAA
......((((......))))...(((((.....(((((..(((((((.((((.....)))).)))))))((((((.........))).))))))))))))). ( -28.70)
>DroEre_CAF1 38517 102 - 1
UUUGGUUGCUAUUCCAGGUAUUGUCUGCUCAUCGGCAAAAUGCUCCAGCUGCACCCAACAGUUGGAGCGUAUUCGAAAGCGAUCCAAUAUGUUGCCGUAGAA
.(((((((((.(((......(((((........))))).((((((((((((.......))))))))))))....)))))))).))))((((....))))... ( -32.70)
>DroAna_CAF1 40543 102 - 1
UUUGGUGGCAAUGCUCGGUAUAGCUUGCUCUUCACUAAAGUGCUCUAGCUGCACCCAGCAGUUGGAGCGGAUGCGGAAGCGUUCCACAAUAUUUCCAUAAAA
(((((((((((.(((......)))))))....)))))))..(((((((((((.....)))))))))))((((((....)))))).................. ( -39.70)
>DroPer_CAF1 39578 102 - 1
CUUGGUGGCUAUGGCGGGUAUUGUUUGUUCAUCGGCGAAAUGUUCCAGUUUGAUCCAGCAAUUGGAUCGAAUGCGAAACCGGUCCAGAACAUUGCUAUAGAA
........(((((((((....(((((....(((((.......(((..(((((((((((...)))))))))))..))).)))))...)))))))))))))).. ( -28.60)
>consensus
UUUGGUGGCUAUGCCAGGUAUUGUCUGCUCAUCGGCAAAAUGCUCCAGCUGCACCCAGCAGUUGGAGCGAAUGCGAAAGCGAUCCAAAAUAUUGCCAUAGAA
................((.(((((.((((....))))...(((((((((((.......))))))))))).........)))))))................. (-17.34 = -17.32 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:39 2006