Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,392,301 – 6,392,421 |
Length | 120 |
Max. P | 0.840914 |
Location | 6,392,301 – 6,392,421 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.61 |
Mean single sequence MFE | -40.85 |
Consensus MFE | -25.32 |
Energy contribution | -24.71 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.50 |
Mean z-score | -2.22 |
Structure conservation index | 0.62 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840914 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6392301 120 + 20766785 AAGGCGGGCAACAUGUGCGCCAUCGGCUGCAUGGAUCCGAUAAUCACAGUCUGGGAUCUAGACAUACAGGACGCUAUCGAGCCCACAUUUAAGCUGGGUUCCAAAGGCAGCCGGAAGCAG ..((((.((.....)).)))).((((((((((((.((((.....)...((((((...)))))).....)))..)))).((((((((......).))))))).....))))))))...... ( -45.60) >DroVir_CAF1 31694 120 + 1 AAGCCAGGUAAUAUGUGCGCCAUCGGCUGCAUGGAUCCGAUUAUCACCAUCUGGGAUCUGGAUAUACAGGAUUCCAUUGAGCCGACAUUCAAGCUUGGCUCAAAGGGUAAUCGCAAAAAA ..((..((...((((((.(((...)))))))))...))(((((((......(((((((((......)).)))))))((((((((((......).)))))))))..)))))))))...... ( -40.80) >DroGri_CAF1 35930 120 + 1 AAGGCUGGGAAUAUGUGUGCCAUUGGCUGCAUGGAUCCGAUCAUUACCAUUUGGGAUCUGGACAUACAAGACUCCAUGGAGCCAACGUUCAAGCUGGGCUCCAAGGGCAAUCGCAAGAAG ..(..((((..((((((.(((...)))))))))..))))..)....((...(((..((((......).)))..)))(((((((...((....))..))))))).))....((....)).. ( -38.00) >DroWil_CAF1 54673 120 + 1 AAGCCAGGAAAUAUGUGCGCCAUUGGCUGCAUGGAUCCCAUAAUAACAGUCUGGGAUUUGGAUAUUCAAGAUUCGAUUGAGCCUACUUUUAAAUUGGGUUCCAAAGGCAGCCGUAAGCAA ..((((.......)).))((...(((((((.((((.((((...(((.(((..(((..((((((.......)))))).....)))))).)))...)))).))))...)))))))...)).. ( -36.80) >DroMoj_CAF1 44761 120 + 1 AAGCCGGGCAAUAUGUGCGCCAUUGGUUGCAUGGAUCCGGUUAUCACGAUCUGGGAUCUGGAUAUACAGGAUUCCAUAGAGCCAACAUUUAAGCUUGGCUCCAAGGGCAACCGCAAAAAA ..((.(((((.....))).))...((((((((((((((.((((((..((((...))))..)))).)).))).))))).((((((((......).))))))).....))))))))...... ( -42.20) >DroAna_CAF1 36075 120 + 1 CGGGCUGGUAACAUGUGCGCCAUAGGCUGCAUGGACCCGAUCAUCACCAUUUGGGACUUGGACAUCCAGGACUCUAUUGAGCCCACCUUUAAGUUGGGCUCCAAGGGCAGUCGCAAGCAA .(.((((....)).)).)((....((((((((((((((((..........))))).(((((....)))))..))))).(((((((.(.....).))))))).....))))))....)).. ( -41.70) >consensus AAGCCAGGCAAUAUGUGCGCCAUUGGCUGCAUGGAUCCGAUAAUCACCAUCUGGGAUCUGGACAUACAGGACUCCAUUGAGCCAACAUUUAAGCUGGGCUCCAAGGGCAACCGCAAGAAA ......(((.........)))..(((((((.(((((((...............))))))).............((...(((((((.........)))))))...)))))))))....... (-25.32 = -24.71 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:38 2006