Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 6,388,397 – 6,388,506 |
Length | 109 |
Max. P | 0.965221 |
Location | 6,388,397 – 6,388,506 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 75.46 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -10.48 |
Energy contribution | -10.44 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.07 |
Mean z-score | -2.26 |
Structure conservation index | 0.40 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 6388397 109 + 20766785 -------ACUGAGAACUGCAAAUUAGCAUUUCAUUGCAAUAUUUGGCAUGGAUGUUUUUAAAAACU-AUUUUUUUCUGUGCAUCAUACAGAGACUUCUUGCCAUUUUGCGAUGUCAG -------.(((((((.(((......))).)))(((((((....(((((.(((.((((....)))).-.....((((((((.....)))))))).))).)))))..))))))).)))) ( -30.30) >DroSec_CAF1 28940 114 + 1 UGACUUUAAUGACAAGGACACAGUA-UAUUUUUUGGCUAUGUUUUGGCUGCAUGUUUUCAAAAACU--UUUUUUUCUGUGCAUCUUACAGAGGCUUCUUGCCAUUUUGCGAUGUCAG .........(((((...........-........(((((.....)))))(((..............--......((((((.....))))))(((.....)))....)))..))))). ( -22.70) >DroSim_CAF1 26754 115 + 1 UGACUUUAAUGACAAGGACAGAGUA-UAUUUUUUGGCUAUAUUUUGGCUGCAUGUUUUCAAAAACU-AUUUUUUUCUGUGCAUCUUACAGAGGCUUCUUGCCAUUUUGCGAUGUCAG .........(((((.((.(((((((-((.........))))))))).))(((..............-.......((((((.....))))))(((.....)))....)))..))))). ( -24.00) >DroEre_CAF1 30192 102 + 1 AAACAU---------------AUUUGCAUAUCAUGGCCAUAUUUGGUAUGGAUGUCUUAAAAAAAUGAUUUUUUUCUGUGCAUCUCAGAGAGGCUUCUUGCCAUUUUGCGAUGUCAG ...(((---------------.(((..(((((...((((....))))...))))).....))).)))........(((.(((((.(((((.(((.....))).))))).)))))))) ( -26.40) >DroYak_CAF1 30299 100 + 1 AAACUU---------------AUUUGCAUUUCAUGCCAAUAUUUGGUAUGGAUGUUUUAAACAAUU--CUUUUUUCUGUGCAUCUCAGAGAGGCUUCUUGCCAUUUUGCGAUGUCAG ....((---------------(...(((((.(((((((.....))))))))))))..)))......--.......(((.(((((.(((((.(((.....))).))))).)))))))) ( -28.50) >consensus AAACUU_A_UGA_AA___CA_AUUAGCAUUUCAUGGCAAUAUUUGGGAUGGAUGUUUUAAAAAACU_AUUUUUUUCUGUGCAUCUUACAGAGGCUUCUUGCCAUUUUGCGAUGUCAG ...........................................................................(((.(((((.((.((.(((.....))).)).)).)))))))) (-10.48 = -10.44 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:37 2006